RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 COL6A1P12109 1028 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 ABCD1P33897 745 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 GSDMDP57764 484 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 HSDL1Q3SXM5 330 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 FIZ1Q96SL8 496 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 PCYT2Q99447 389 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 SMARCAD1Q9H4L7 1026 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 ATP6V0A4Q9HBG4 840 aa23.33■■□□□ 1.33
VPS28-212ENST00000530836 MYH9P35579 1960 aaKnown RBP23.33■■□□□ 1.33
VPS28-212ENST00000530836 ASGR1P07306 291 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 MYBP10242 640 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 ATP4AP20648 1035 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 SCP2P22307 547 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 RFC5P40937 340 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 CASP5P51878 434 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 ACLYP53396 1101 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 SMTNP53814 917 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 NECAB2Q7Z6G3 386 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 VSTM4Q8IW00 320 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 NELFCDQ8IXH7 590 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 BBXQ8WY36 941 aaPredicted RBP23.33■■□□□ 1.32
VPS28-212ENST00000530836 RTN4Q9NQC3 1192 aaKnown RBP23.33■■□□□ 1.32
VPS28-212ENST00000530836 PDLIM7Q9NR12 457 aa23.33■■□□□ 1.32
VPS28-212ENST00000530836 TYW1Q9NV66 732 aaKnown RBP23.33■■□□□ 1.32
VPS28-212ENST00000530836 TMEM150BA6NC51 233 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 CAPN15O75808 1086 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 MMP3P08254 477 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 COPB1P53618 953 aaKnown RBP23.32■■□□□ 1.32
VPS28-212ENST00000530836 FAM102BQ5T8I3 360 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 FILIP1Q7Z7B0 1213 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 GOLGA5Q8TBA6 731 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 GLG1Q92896 1179 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 C11orf49Q9H6J7 331 aa23.32■■□□□ 1.32
VPS28-212ENST00000530836 N4BP3O15049 544 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 KPNA6O60684 536 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 PPFIA4O75335 1185 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 HOXD8P13378 290 aaPredicted RBP23.31■■□□□ 1.32
VPS28-212ENST00000530836 RPL13P26373 211 aaKnown RBP23.31■■□□□ 1.32
VPS28-212ENST00000530836 DGKDQ16760 1214 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 LRRC55Q6ZSA7 311 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 TRMT1LQ7Z2T5 733 aaKnown RBP23.31■■□□□ 1.32
VPS28-212ENST00000530836 ZC3H3Q8IXZ2 948 aaKnown RBP23.31■■□□□ 1.32
VPS28-212ENST00000530836 SPIRE2Q8WWL2 714 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 CNOT6LQ96LI5 555 aaKnown RBP23.31■■□□□ 1.32
VPS28-212ENST00000530836 STRA6Q9BX79 667 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 TMEM206Q9H813 350 aa23.31■■□□□ 1.32
VPS28-212ENST00000530836 H0YCG3 227 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 PRPF6O94906 941 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 NMT1P30419 496 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 POLGP54098 1239 aaPredicted RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 DMP1Q13316 513 aaPredicted RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 NFIL3Q16649 462 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 MAEAQ7L5Y9 396 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 TMC6Q7Z403 805 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 SLC7A3Q8WY07 619 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 HVCN1Q96D96 273 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 NTPCRQ9BSD7 190 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 SENP6Q9GZR1 1112 aaPredicted RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 DHX33Q9H6R0 707 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 INTS13Q9NVM9 706 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 MKI67P46013 3256 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 K7ENM7 598 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 CETN3O15182 167 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 GAS2O43903 313 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 PPP1R37O75864 691 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 CABYRO75952 493 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 TARBP2Q15633 366 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 MTERF2Q49AM1 385 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 SPECC1LQ69YQ0 1117 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 CXCL17Q6UXB2 119 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 CCDC186Q7Z3E2 898 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 CREBRFQ8IUR6 639 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 ATP8B4Q8TF62 1192 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 SH2D3AQ9BRG2 576 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 TUBGCP2Q9BSJ2 902 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 POLD4Q9HCU8 107 aa23.3■■□□□ 1.32
VPS28-212ENST00000530836 CGNQ9P2M7 1197 aaKnown RBP23.3■■□□□ 1.32
VPS28-212ENST00000530836 FRMPD3Q5JV73 1810 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 A0A1W2PQ45 241 aaPredicted RBP23.29■■□□□ 1.32
VPS28-212ENST00000530836 A0A1W2PQY0 241 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 MYL3P08590 195 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 MTIF2P46199 727 aaKnown RBP23.29■■□□□ 1.32
VPS28-212ENST00000530836 RGS19P49795 217 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 NCKAP1LP55160 1127 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 SNRPFP62306 86 aaKnown RBP23.29■■□□□ 1.32
VPS28-212ENST00000530836 PURAQ00577 322 aaKnown RBP23.29■■□□□ 1.32
VPS28-212ENST00000530836 HS2ST1Q7LGA3 356 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 IFT74Q96LB3 600 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 GLT1D1Q96MS3 346 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 JPH2Q9BR39 696 aaPredicted RBP23.29■■□□□ 1.32
VPS28-212ENST00000530836 ERAP1Q9NZ08 941 aa23.29■■□□□ 1.32
VPS28-212ENST00000530836 ARID2Q68CP9 1835 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 MYH11P35749 1972 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 HOXD13P35453 343 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 MARSP56192 900 aaKnown RBP23.28■■□□□ 1.32
VPS28-212ENST00000530836 GTF2BQ00403 316 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 ADAM9Q13443 819 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 EMC2Q15006 297 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 GBP3Q9H0R5 595 aa23.28■■□□□ 1.32
VPS28-212ENST00000530836 TAB2Q9NYJ8 693 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms