RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MRPS27Q92552 414 aaKnown RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 DPF3Q92784 378 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 CALML4Q96GE6 196 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 HTATIP2Q9BUP3 242 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.28□□□□□ -1.08
CD44-228ENST00000528455 NT5C3AQ9H0P0 336 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 MLXIPQ9HAP2 919 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 PDGFCQ9NRA1 345 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 ZDHHC3Q9NYG2 299 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 SLC9A2Q9UBY0 812 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 TCEAL9Q9UHQ7 104 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 VAV3Q9UKW4 847 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 HCN4Q9Y3Q4 1203 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 PCDHA10Q9Y5I2 948 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 DDX49Q9Y6V7 483 aaKnown RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 WDR81Q562E7 1941 aa8.28□□□□□ -1.08
CD44-228ENST00000528455 MYH9P35579 1960 aaKnown RBP8.28□□□□□ -1.08
CD44-228ENST00000528455 IGKV6D-21A0A0A0MT36 114 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 WDR64B1ANS9 1081 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 LYPLA2O95372 231 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 GH1P01241 217 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 F11P03951 625 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 P4HBP07237 508 aaKnown RBP8.27□□□□□ -1.09
CD44-228ENST00000528455 PSAPP07602 524 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 SPATA31C1P0DKV0 1188 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 ATP4AP20648 1035 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CDC25AP30304 524 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CYP2C19P33261 490 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 SYKP43405 635 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 NDUFA8P51970 172 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 NKX3-2P78367 333 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 LY6KQ17RY6 165 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 KLHL40Q2TBA0 621 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CCDC144BQ3MJ40 725 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 SPECC1Q5M775 1068 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 PRAMEF19Q5SWL8 479 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 RRAGBQ5VZM2 374 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 HAUS3Q68CZ6 603 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 ABHD15Q6UXT9 468 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CYFIP1Q7L576 1253 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 MIER3Q7Z3K6 550 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CABP7Q86V35 215 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CATSPER3Q86XQ3 398 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 FSIP1Q8NA03 581 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 C1orf216Q8TAB5 229 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 NEK9Q8TD19 979 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 GPT2Q8TD30 523 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 GJA10Q969M2 543 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CCDC34Q96HJ3 373 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 NACC1Q96RE7 527 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 EIF2AK1Q9BQI3 630 aaKnown RBP8.27□□□□□ -1.09
CD44-228ENST00000528455 ANP32EQ9BTT0 268 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 MMTAG2Q9BU76 263 aaKnown RBP8.27□□□□□ -1.09
CD44-228ENST00000528455 PANK2Q9BZ23 570 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 UNC45AQ9H3U1 944 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 CUEDC2Q9H467 287 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 JPH1Q9HDC5 661 aaPredicted RBP8.27□□□□□ -1.09
CD44-228ENST00000528455 DISC1Q9NRI5 854 aa8.27□□□□□ -1.09
CD44-228ENST00000528455 GSTTP1A0A1W2PQM5 241 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 CTAGE5O15320 804 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 POLR2DO15514 142 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 DUSP11O75319 330 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 LETM1O95202 739 aaPredicted RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 GGPS1O95749 300 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 CCNE2O96020 404 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 SLFN14P0C7P3 912 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 PFKFB1P16118 471 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 LIG1P18858 919 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 UBA1P22314 1058 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 SCNN1AP37088 669 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 CCT6AP40227 531 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 ADCYAP1R1P41586 468 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 QARSP47897 775 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 SLC26A2P50443 739 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 ACTR2P61160 394 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 CACNB2Q08289 660 aaPredicted RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 LONRF3Q496Y0 759 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 MAP3K21Q5TCX8 1036 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 NCAPH2Q6IBW4 605 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 MIS18BP1Q6P0N0 1132 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 CAPN12Q6ZSI9 719 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 PLPPR4Q7Z2D5 763 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 NECAB2Q7Z6G3 386 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 UBE2Q1Q7Z7E8 422 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 FBXO16Q8IX29 292 aaPredicted RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 C4orf19Q8IY42 314 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 UIMC1Q96RL1 719 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 GAS2L1Q99501 681 aaPredicted RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 TRAIPQ9BWF2 469 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 LRRC27Q9C0I9 530 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 BCAS3Q9H6U6 928 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 ZSWIM4Q9H7M6 989 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 DDX19AQ9NUU7 478 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 HOOK1Q9UJC3 728 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 DNM3Q9UQ16 869 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 GNEQ9Y223 722 aaKnown RBP8.26□□□□□ -1.09
CD44-228ENST00000528455 SAMM50Q9Y512 469 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 NR2E3Q9Y5X4 410 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 CEP290O15078 2479 aa8.26□□□□□ -1.09
CD44-228ENST00000528455 KDM3AQ9Y4C1 1321 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms