RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 CAV1Q03135 178 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 DHX34Q14147 1143 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 ANKRD20A3Q5VUR7 823 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 HAUS6Q7Z4H7 955 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 ZBTB33Q86T24 672 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CATSPER3Q86XQ3 398 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 LRRC8CQ8TDW0 803 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 LPAR1Q92633 364 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 MTRQ99707 1265 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 ACTR5Q9H9F9 607 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CHD2O14647 1828 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 HGSO14964 777 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 WDR46O15213 610 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 IGBP1P78318 339 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CCNA1P78396 465 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 RASA3Q14644 834 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 CCDC110Q8TBZ0 833 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 DDX47Q9H0S4 455 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF277Q9NRM2 450 aaPredicted RBP11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 SPEF2Q9C093 1822 aa11.57□□□□□ -0.56
LIMCH1-205ENST00000503057 A0A087X0B3 334 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 A0A1B0GUA9 196 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 CYP2C19P33261 490 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 SF3A3Q12874 501 aaKnown RBP eCLIP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 TRIM50Q86XT4 487 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 GPD1LQ8N335 351 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 DNAJC5Q9H3Z4 198 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 KDM3BQ7LBC6 1761 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ESYT3A0FGR9 886 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 TLR3O15455 904 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 TBXAS1P24557 533 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ATP6V1G3Q96LB4 118 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 FAM213AQ9BRX8 229 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 RTN2O75298 545 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 SLC8A1P32418 973 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 IFNAR2P48551 515 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 SNRPFP62306 86 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 CAPN12Q6ZSI9 719 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 FAM151AQ8WW52 585 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 VCPKMTQ9H867 229 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 GABBR1Q9UBS5 961 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 BAIAP2L1Q9UHR4 511 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 HPCAL4Q9UM19 191 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 SNX24Q9Y343 169 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 MCF2LO15068 1137 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ACTN1P12814 892 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 NEDD9Q14511 834 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 E2F4Q16254 413 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 RBM41Q96IZ5 413 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ZDHHC15Q96MV8 337 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 SEMA6BQ9H3T3 888 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF70Q9UC06 446 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 AKT3Q9Y243 479 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 FHOD1Q9Y613 1164 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 POC1B-GALNT4F8VUJ3 575 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 H7C0C1 242 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 TJP3O95049 919 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ATP5OP48047 213 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 PMS2P54278 862 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 PDCLQ13371 301 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 CENPPQ6IPU0 288 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ARHGEF2Q92974 986 aaKnown RBP11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 RIT2Q99578 217 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ZNF302Q9NR11 478 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 ADAM22Q9P0K1 906 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 PCDHA10Q9Y5I2 948 aa11.56□□□□□ -0.56
LIMCH1-205ENST00000503057 PLS3P13797 630 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 KLHDC7AQ5VTJ3 777 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 RSBN1LQ6PCB5 846 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 PDZD4Q76G19 769 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 A6NJR5 290 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 CYP11B2P19099 503 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 CHRNA5P30532 468 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 TRIM72Q6ZMU5 477 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 GMCL1P1Q8NEA9 526 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 FBXL13Q8NEE6 735 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 RPF1Q9H9Y2 349 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 HSPBP1Q9NZL4 362 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 KIAA0391O15091 583 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 XPOTO43592 962 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 CD58P19256 250 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 MUTP22033 750 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 SLCO1A2P46721 670 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 SNCBQ16143 134 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 Q4G0T1 1027 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 APOBEC3FQ8IUX4 373 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 MS4A14Q96JA4 679 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 POLR3FQ9H1D9 316 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 PSD3Q9NYI0 1048 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 INTUQ9ULD6 942 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 GOLGA8SH3BPF8 625 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 CALB1P05937 261 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 PRLRP16471 622 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 TMED2Q15363 201 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 PAPD7Q5XG87 772 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 DPY19L2Q6NUT2 758 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 SWSAP1Q6NVH7 229 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 WDR93Q6P2C0 686 aa11.55□□□□□ -0.56
LIMCH1-205ENST00000503057 TRIM65Q6PJ69 517 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms