RNA–Protein interactions for RNA: ENST00000492462.1

MDC1-207, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 3

Gene MDC1, Length 819 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-207ENST00000492462 CAMK1Q14012 370 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 EMC2Q15006 297 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 TTC38Q5R3I4 469 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 ECHDC2Q86YB7 292 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 NOSTRINQ8IVI9 506 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 ZNF710Q8N1W2 664 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 RNF169Q8NCN4 708 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 PIGOQ8TEQ8 1089 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 PRPF31Q8WWY3 499 aaKnown RBP13.17□□□□□ -0.3
MDC1-207ENST00000492462 SLC7A3Q8WY07 619 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 GCOM2Q9BZD3 368 aaPredicted RBP13.17□□□□□ -0.3
MDC1-207ENST00000492462 ATP6V0A4Q9HBG4 840 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 IFT122Q9HBG6 1241 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 TMEM161AQ9NX61 479 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 COL4A3BPQ9Y5P4 624 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 WDFY4Q6ZS81 3184 aa13.17□□□□□ -0.3
MDC1-207ENST00000492462 FAM86C2PA6NEL3 165 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 MED24O75448 989 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 LYPLA2O95372 231 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 ITGB1P05556 798 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 OR52Z1P0C646 297 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 SRGAP2CP0DJJ0 459 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 SPATA31C1P0DKV0 1188 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 ZSCAN20P17040 1043 aaPredicted RBP13.16□□□□□ -0.3
MDC1-207ENST00000492462 RFC5P40937 340 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 TECP42680 631 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 GNL2Q13823 731 aaKnown RBP13.16□□□□□ -0.3
MDC1-207ENST00000492462 PTPROQ16827 1216 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 TCEAL5Q5H9L2 206 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 OTUD6AQ7L8S5 288 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 ZNF410Q86VK4 478 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 C4orf32Q8N8J7 132 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 KLHL23Q8NBE8 558 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 HLA-CQ95604 372 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 C11orf84Q9BUA3 381 aaPredicted RBP13.16□□□□□ -0.3
MDC1-207ENST00000492462 ELAC1Q9H777 363 aaKnown RBP13.16□□□□□ -0.3
MDC1-207ENST00000492462 MINDY3Q9H8M7 445 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 UPF2Q9HAU5 1272 aaKnown RBP13.16□□□□□ -0.3
MDC1-207ENST00000492462 TYW1Q9NV66 732 aaKnown RBP13.16□□□□□ -0.3
MDC1-207ENST00000492462 COG5Q9UP83 839 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 PLAGL2Q9UPG8 496 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 RWDD3Q9Y3V2 267 aa13.16□□□□□ -0.3
MDC1-207ENST00000492462 U2AF2P26368 475 aaKnown RBP eCLIP13.15□□□□□ -0.3
MDC1-207ENST00000492462 IRS1P35568 1242 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 RARRES1P49788 294 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 CDC42EP1Q00587 391 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 LAMTOR4Q0VGL1 99 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 LONRF3Q496Y0 759 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 TIGD5Q53EQ6 642 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 CLLU1OSQ5K130 101 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 LRRC55Q6ZSA7 311 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 FAM43BQ6ZT52 329 aaPredicted RBP13.15□□□□□ -0.3
MDC1-207ENST00000492462 ZNF598Q86UK7 904 aaKnown RBP13.15□□□□□ -0.3
MDC1-207ENST00000492462 FERMT3Q86UX7 667 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 CATSPER3Q86XQ3 398 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 SPPL3Q8TCT6 385 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 PSPC1Q8WXF1 523 aaKnown RBP13.15□□□□□ -0.3
MDC1-207ENST00000492462 CASD1Q96PB1 797 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 JPH2Q9BR39 696 aaPredicted RBP13.15□□□□□ -0.3
MDC1-207ENST00000492462 PLVAPQ9BX97 442 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 CWH43Q9H720 699 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 UBE2ZQ9H832 354 aaPredicted RBP13.15□□□□□ -0.3
MDC1-207ENST00000492462 PPME1Q9Y570 386 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 PCDHB6Q9Y5E3 794 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 PCDHGC5Q9Y5F6 944 aa13.15□□□□□ -0.3
MDC1-207ENST00000492462 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.14□□□□□ -0.31
MDC1-207ENST00000492462 A0A0U1RQF3 1178 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 MEIS3P2A8K0S8 358 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 KCNA5P22460 613 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 SFPQP23246 707 aaKnown RBP eCLIP13.14□□□□□ -0.31
MDC1-207ENST00000492462 GJB2P29033 226 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 GTF2F1P35269 517 aaKnown RBP eCLIP13.14□□□□□ -0.31
MDC1-207ENST00000492462 PBX3P40426 434 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 NHLH1Q02575 133 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 CATSPER4Q7RTX7 472 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 RNF149Q8NC42 400 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 NEK9Q8TD19 979 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 HELQQ8TDG4 1101 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 ASAP3Q8TDY4 903 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 LPPQ93052 612 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 P2RX5Q93086 422 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 MTRQ99707 1265 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 TMEM117Q9H0C3 514 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 LMAN2LQ9H0V9 348 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 NSUN3Q9H649 340 aaKnown RBP13.14□□□□□ -0.31
MDC1-207ENST00000492462 ANKEF1Q9NU02 776 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 PIN4Q9Y237 131 aaKnown RBP13.14□□□□□ -0.31
MDC1-207ENST00000492462 CFAP54Q96N23 3096 aa13.14□□□□□ -0.31
MDC1-207ENST00000492462 ZDBF2Q9HCK1 2354 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 HOXA11P31270 313 aaPredicted RBP13.13□□□□□ -0.31
MDC1-207ENST00000492462 ARL2P36404 184 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 PHKA2P46019 1235 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 TRAPPC10P48553 1259 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 ORC2Q13416 577 aaPredicted RBP13.13□□□□□ -0.31
MDC1-207ENST00000492462 ECM1Q16610 540 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 SPOUT1Q5T280 376 aaKnown RBP13.13□□□□□ -0.31
MDC1-207ENST00000492462 TWF2Q6IBS0 349 aaKnown RBP13.13□□□□□ -0.31
MDC1-207ENST00000492462 POTEGQ6S5H5 508 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 ADGRD2Q7Z7M1 963 aa13.13□□□□□ -0.31
MDC1-207ENST00000492462 COLGALT1Q8NBJ5 622 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms