RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 HSPA1AP0DMV8 641 aaKnown RBP23.8■■□□□ 1.4
SMC4-221ENST00000489573 HSPA1BP0DMV9 641 aaKnown RBP23.8■■□□□ 1.4
SMC4-221ENST00000489573 GLRA2P23416 452 aa23.8■■□□□ 1.4
SMC4-221ENST00000489573 CACNB2Q08289 660 aaPredicted RBP23.8■■□□□ 1.4
SMC4-221ENST00000489573 TRIM32Q13049 653 aa23.8■■□□□ 1.4
SMC4-221ENST00000489573 NFIL3Q16649 462 aa23.8■■□□□ 1.4
SMC4-221ENST00000489573 IER5Q5VY09 327 aa23.8■■□□□ 1.4
SMC4-221ENST00000489573 FILIP1Q7Z7B0 1213 aa23.8■■□□□ 1.4
SMC4-221ENST00000489573 GOLGA5Q8TBA6 731 aa23.8■■□□□ 1.4
SMC4-221ENST00000489573 DENND3A2RUS2 1198 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 GOLGA6L6A8MZA4 724 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 CETN3O15182 167 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 GNA14O95837 355 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 F2P00734 622 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 NR3C1P04150 777 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 ELNP15502 786 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 NR2F2P24468 414 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 RPL13P26373 211 aaKnown RBP23.79■■□□□ 1.4
SMC4-221ENST00000489573 ABCD1P33897 745 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 NAMPTP43490 491 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 ADAM9Q13443 819 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 NR1I3Q14994 352 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 ZNF296Q8WUU4 475 aaPredicted RBP23.79■■□□□ 1.4
SMC4-221ENST00000489573 ARHGAP28Q9P2N2 729 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 ADGRA3Q8IWK6 1321 aa23.79■■□□□ 1.4
SMC4-221ENST00000489573 SEPT4O43236 478 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 ADCY3O60266 1144 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 C22orf31O95567 290 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 HMGCRP04035 888 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 TPM2P07951 284 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 SCP2P22307 547 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 CNGA1P29973 690 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 MTIF2P46199 727 aaKnown RBP23.78■■□□□ 1.4
SMC4-221ENST00000489573 FSCN1Q16658 493 aaKnown RBP23.78■■□□□ 1.4
SMC4-221ENST00000489573 LRRC71Q8N4P6 559 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 RAET1EQ8TD07 263 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 SUGCTQ9HAC7 445 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 RTN4Q9NQC3 1192 aaKnown RBP23.78■■□□□ 1.4
SMC4-221ENST00000489573 AGPAT3Q9NRZ7 376 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 TBX20Q9UMR3 447 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 EXOC7Q9UPT5 735 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 N4BP3O15049 544 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 MAGEB2O15479 319 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 PRKAR2AP13861 404 aaKnown RBP23.78■■□□□ 1.4
SMC4-221ENST00000489573 IGBP1P78318 339 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 PPFIA1Q13136 1202 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 DRP2Q13474 957 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 MAP4K3Q8IVH8 894 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 RETREG2Q8NC44 543 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 DEPTORQ8TB45 409 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 PSPC1Q8WXF1 523 aaKnown RBP23.78■■□□□ 1.4
SMC4-221ENST00000489573 KCNN1Q92952 543 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 TUBGCP2Q9BSJ2 902 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 VPS16Q9H269 839 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 IKZF4Q9H2S9 585 aa23.78■■□□□ 1.4
SMC4-221ENST00000489573 CGNQ9P2M7 1197 aaKnown RBP23.78■■□□□ 1.4
SMC4-221ENST00000489573 LRRIQ4A6NIV6 560 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 CLIC2O15247 247 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 MYL3P08590 195 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 GJA9P57773 515 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 IRX5P78411 483 aaPredicted RBP23.77■■□□□ 1.4
SMC4-221ENST00000489573 BEX3Q00994 111 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 MKRN4PQ13434 485 aaPredicted RBP23.77■■□□□ 1.4
SMC4-221ENST00000489573 CCDC40Q4G0X9 1142 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 COL13A1Q5TAT6 717 aaPredicted RBP23.77■■□□□ 1.4
SMC4-221ENST00000489573 VSTM4Q8IW00 320 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 KAT2BQ92831 832 aa23.77■■□□□ 1.4
SMC4-221ENST00000489573 TRIM44Q96DX7 344 aaPredicted RBP23.77■■□□□ 1.4
SMC4-221ENST00000489573 UPF3AQ9H1J1 476 aaKnown RBP23.77■■□□□ 1.4
SMC4-221ENST00000489573 RARBP10826 455 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 PRKCSHP14314 528 aaPredicted RBP23.76■■□□□ 1.39
SMC4-221ENST00000489573 PRMT2P55345 433 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 SNRPFP62306 86 aaKnown RBP23.76■■□□□ 1.39
SMC4-221ENST00000489573 MAP2K1Q02750 393 aaPredicted RBP23.76■■□□□ 1.39
SMC4-221ENST00000489573 CAPSQ13938 189 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 MXD4Q14582 209 aaPredicted RBP23.76■■□□□ 1.39
SMC4-221ENST00000489573 GRIK4Q16099 956 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 EFCAB12Q6NXP0 572 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 TMC6Q7Z403 805 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 PXYLP1Q8TE99 480 aa23.76■■□□□ 1.39
SMC4-221ENST00000489573 PRPF31Q8WWY3 499 aaKnown RBP23.76■■□□□ 1.39
SMC4-221ENST00000489573 SUCLA2Q9P2R7 463 aaPredicted RBP23.76■■□□□ 1.39
SMC4-221ENST00000489573 LGALS16A8MUM7 142 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 SLC16A3O15427 465 aaKnown RBP23.75■■□□□ 1.39
SMC4-221ENST00000489573 TEX33O43247 280 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 KLRC1P26715 233 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 DNM2P50570 870 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 MARSP56192 900 aaKnown RBP23.75■■□□□ 1.39
SMC4-221ENST00000489573 MFSD10Q14728 455 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 METTL13Q8N6R0 699 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 BEGAINQ9BUH8 593 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 KATNAL1Q9BW62 490 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 SPC25Q9HBM1 224 aa23.75■■□□□ 1.39
SMC4-221ENST00000489573 KPNA6O60684 536 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 C6orf222P0C671 652 aaPredicted RBP23.74■■□□□ 1.39
SMC4-221ENST00000489573 CCND3P30281 292 aaPredicted RBP23.74■■□□□ 1.39
SMC4-221ENST00000489573 PSEN2P49810 448 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 CLCN3P51790 818 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 MYBPC2Q14324 1141 aa23.74■■□□□ 1.39
SMC4-221ENST00000489573 MAN2A1Q16706 1144 aa23.74■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms