RNA–Protein interactions for RNA: ENST00000474828.1

SCAF11-206, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 757 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-206ENST00000474828 LINC01599Q8WXQ3 324 aa18.8■□□□□ 0.6
SCAF11-206ENST00000474828 RAD54LQ92698 747 aa18.8■□□□□ 0.6
SCAF11-206ENST00000474828 KIFAP3Q92845 792 aa18.8■□□□□ 0.6
SCAF11-206ENST00000474828 CDK5RAP3Q96JB5 506 aa18.8■□□□□ 0.6
SCAF11-206ENST00000474828 CCDC43Q96MW1 224 aaKnown RBP18.8■□□□□ 0.6
SCAF11-206ENST00000474828 FDXACB1Q9BRP7 624 aaPredicted RBP18.8■□□□□ 0.6
SCAF11-206ENST00000474828 RUSC1Q9BVN2 902 aa18.8■□□□□ 0.6
SCAF11-206ENST00000474828 GCOM2Q9BZD3 368 aaPredicted RBP18.8■□□□□ 0.6
SCAF11-206ENST00000474828 TSPYL2Q9H2G4 693 aaPredicted RBP18.8■□□□□ 0.6
SCAF11-206ENST00000474828 ST3GAL5Q9UNP4 418 aa18.8■□□□□ 0.6
SCAF11-206ENST00000474828 PAK2Q13177 524 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 E2F4Q16254 413 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 RESP18Q5W5W9 173 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 CDCA2Q69YH5 1023 aaPredicted RBP18.79■□□□□ 0.6
SCAF11-206ENST00000474828 ADALQ6DHV7 355 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 CHAMP1Q96JM3 812 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 SLC9A7Q96T83 725 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 NTPCRQ9BSD7 190 aaKnown RBP18.79■□□□□ 0.6
SCAF11-206ENST00000474828 TRAIPQ9BWF2 469 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 INO80BQ9C086 356 aaPredicted RBP18.79■□□□□ 0.6
SCAF11-206ENST00000474828 C17orf75Q9HAS0 396 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 GPRC5CQ9NQ84 441 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 CCDC39Q9UFE4 941 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 SLC4A7Q9Y6M7 1214 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 CHD9Q3L8U1 2897 aa18.79■□□□□ 0.6
SCAF11-206ENST00000474828 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.78■□□□□ 0.6
SCAF11-206ENST00000474828 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.78■□□□□ 0.6
SCAF11-206ENST00000474828 ENPP3O14638 875 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 TXLNAP40222 546 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 FAM189BP81408 668 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 GPR153Q6NV75 609 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 CCDC73Q6ZRK6 1079 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 NLRP7Q8WX94 980 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 LARP4BQ92615 738 aaKnown RBP18.78■□□□□ 0.6
SCAF11-206ENST00000474828 POLR3FQ9H1D9 316 aaPredicted RBP18.78■□□□□ 0.6
SCAF11-206ENST00000474828 MINDY3Q9H8M7 445 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 COL4A6Q14031 1691 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 MICAL3Q7RTP6 2002 aa18.78■□□□□ 0.6
SCAF11-206ENST00000474828 RBAK-RBAKDNI3L0D1 243 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 CMA1P23946 247 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 NAMPTP43490 491 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 ME1P48163 572 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 ZNF131P52739 623 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 TFDP1Q14186 410 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 RNF149Q8NC42 400 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 BSNDQ8WZ55 320 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 TOP1MTQ969P6 601 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 SPATA32Q96LK8 384 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 PLIN2Q99541 437 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 CUEDC2Q9H467 287 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 CHST12Q9NRB3 414 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 RGS18Q9NS28 235 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 BMP2KQ9NSY1 1161 aaPredicted RBP18.77■□□□□ 0.6
SCAF11-206ENST00000474828 CHMP5Q9NZZ3 219 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 ODF2LQ9ULJ1 636 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 GINS2Q9Y248 185 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 HPSEQ9Y251 543 aa18.77■□□□□ 0.6
SCAF11-206ENST00000474828 PTPRSQ13332 1948 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 A0A1W2PQ27 194 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 A0A1W2PQ64 194 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 A0A1W2PQD8 194 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 MGEA5O60502 916 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 SRGAP2CP0DJJ0 459 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 PHKA2P46019 1235 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 DEFB103AP81534 67 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 AMHR2Q16671 573 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 FAM187BQ17R55 369 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 FAM102BQ5T8I3 360 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 RRAGBQ5VZM2 374 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 FAM109BQ6ICB4 259 aaPredicted RBP18.76■□□□□ 0.59
SCAF11-206ENST00000474828 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.76■□□□□ 0.59
SCAF11-206ENST00000474828 DRC1Q96MC2 740 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 NLRP4Q96MN2 994 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 PPP1R16BQ96T49 567 aa18.76■□□□□ 0.59
SCAF11-206ENST00000474828 C9IYK1 514 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 SOX1O00570 391 aaPredicted RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 HIP1RO75146 1068 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 GJB5O95377 273 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 ATP2A2P16615 1042 aaKnown RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 SFPQP23246 707 aaKnown RBP eCLIP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 HOXA11P31270 313 aaPredicted RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 HTRA4P83105 476 aaPredicted RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 MBTD1Q05BQ5 628 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 MCM6Q14566 821 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 PPP2R5AQ15172 486 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 ZRSR1Q15695 479 aaKnown RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 CNNM4Q6P4Q7 775 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 HERC6Q8IVU3 1022 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 SPIRE2Q8WWL2 714 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 ZNF668Q96K58 619 aaPredicted RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 CCDC113Q9H0I3 377 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 FZD8Q9H461 694 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 RC3H2Q9HBD1 1191 aaKnown RBP18.75■□□□□ 0.59
SCAF11-206ENST00000474828 AGPAT5Q9NUQ2 364 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 KBTBD4Q9NVX7 518 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 SZT2Q5T011 3432 aa18.75■□□□□ 0.59
SCAF11-206ENST00000474828 AMHP03971 560 aa18.74■□□□□ 0.59
SCAF11-206ENST00000474828 KCNJ6P48051 423 aa18.74■□□□□ 0.59
SCAF11-206ENST00000474828 NFX1Q12986 1120 aaKnown RBP18.74■□□□□ 0.59
SCAF11-206ENST00000474828 GIT2Q14161 759 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms