RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 DNM2P50570 870 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 CEP170P1Q96L14 293 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 SCLT1Q96NL6 688 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 HSD17B14Q9BPX1 270 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 TRAIPQ9BWF2 469 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 EPHX3Q9H6B9 360 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 BRMS1Q9HCU9 246 aa20.79■□□□□ 0.92
COL7A1-209ENST00000474432 DKC1O60832 514 aaKnown RBP eCLIP20.78■□□□□ 0.92
COL7A1-209ENST00000474432 YWHABP31946 246 aaKnown RBP20.78■□□□□ 0.92
COL7A1-209ENST00000474432 ERVFC1P60507 584 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 CYP4A11Q02928 519 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 CCDC83Q8IWF9 413 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 PRPF31Q8WWY3 499 aaKnown RBP20.78■□□□□ 0.92
COL7A1-209ENST00000474432 TMEM143Q96AN5 459 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 EIF2AK1Q9BQI3 630 aaKnown RBP20.78■□□□□ 0.92
COL7A1-209ENST00000474432 TMEM60Q9H2L4 133 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 IGFLR1Q9H665 355 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 CHST12Q9NRB3 414 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 PPME1Q9Y570 386 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 PCDHB12Q9Y5F1 795 aa20.78■□□□□ 0.92
COL7A1-209ENST00000474432 FSCN2O14926 492 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 MARCH6O60337 910 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 BAG4O95429 457 aaKnown RBP20.77■□□□□ 0.92
COL7A1-209ENST00000474432 EOMESO95936 686 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 RFC5P40937 340 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 GUCY1B3Q02153 619 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 UBE3AQ05086 875 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 PUS10Q3MIT2 529 aaKnown RBP20.77■□□□□ 0.92
COL7A1-209ENST00000474432 SPOUT1Q5T280 376 aaKnown RBP20.77■□□□□ 0.92
COL7A1-209ENST00000474432 EP400NLQ6ZTU2 488 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 NLRP4Q96MN2 994 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 JPH2Q9BR39 696 aaPredicted RBP20.77■□□□□ 0.92
COL7A1-209ENST00000474432 ZSWIM4Q9H7M6 989 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 MINDY3Q9H8M7 445 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 XPNPEP1Q9NQW7 623 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 AAASQ9NRG9 546 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 CLEC1BQ9P126 229 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 PCDHA12Q9UN75 941 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 COL4A3BPQ9Y5P4 624 aa20.77■□□□□ 0.92
COL7A1-209ENST00000474432 MEIS3P2A8K0S8 358 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 HOXA2O43364 376 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 LYPLA2O95372 231 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 GLP2RO95838 553 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 LAG3P18627 525 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 PBX3P40426 434 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 PHKA2P46019 1235 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 PLCB3Q01970 1234 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 CALCRLQ16602 461 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 EFHBQ8N7U6 833 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 RNF169Q8NCN4 708 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 SLC7A3Q8WY07 619 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 MSLNLQ96KJ4 702 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 LLPHQ9BRT6 129 aaKnown RBP20.76■□□□□ 0.91
COL7A1-209ENST00000474432 TTC12Q9H892 705 aaPredicted RBP20.76■□□□□ 0.91
COL7A1-209ENST00000474432 BMP2KQ9NSY1 1161 aaPredicted RBP20.76■□□□□ 0.91
COL7A1-209ENST00000474432 DACT1Q9NYF0 836 aa20.76■□□□□ 0.91
COL7A1-209ENST00000474432 NEMFO60524 1076 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 SFPQP23246 707 aaKnown RBP eCLIP20.75■□□□□ 0.91
COL7A1-209ENST00000474432 TXKP42681 527 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 POLGP54098 1239 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-209ENST00000474432 LAMTOR4Q0VGL1 99 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 TRIM29Q14134 588 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 EMC2Q15006 297 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 CLUL1Q15846 466 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 XKR9Q5GH70 373 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 KCNT2Q6UVM3 1135 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 TPH2Q8IWU9 490 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 LRRC43Q8N309 656 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 HELQQ8TDG4 1101 aa20.75■□□□□ 0.91
COL7A1-209ENST00000474432 INO80BQ9C086 356 aaPredicted RBP20.75■□□□□ 0.91
COL7A1-209ENST00000474432 C5orf42Q9H799 3197 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 MBTPS2O43462 519 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 ZNF623O75123 536 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 HOXA11P31270 313 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-209ENST00000474432 NRIP1P48552 1158 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 RBM10P98175 930 aaKnown RBP20.74■□□□□ 0.91
COL7A1-209ENST00000474432 CSPP1Q1MSJ5 1256 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 OTUD6AQ7L8S5 288 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 RBM23Q86U06 439 aaKnown RBP20.74■□□□□ 0.91
COL7A1-209ENST00000474432 FERMT3Q86UX7 667 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 THNSL1Q8IYQ7 743 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 GJD3Q8N144 294 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 VN1R2Q8NFZ6 395 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 PSPC1Q8WXF1 523 aaKnown RBP20.74■□□□□ 0.91
COL7A1-209ENST00000474432 MRPS27Q92552 414 aaKnown RBP20.74■□□□□ 0.91
COL7A1-209ENST00000474432 LPPQ93052 612 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 TLR9Q9NR96 1032 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 AGPAT5Q9NUQ2 364 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 FAM105AQ9NUU6 356 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 PIN4Q9Y237 131 aaKnown RBP20.74■□□□□ 0.91
COL7A1-209ENST00000474432 LZTS1Q9Y250 596 aa20.74■□□□□ 0.91
COL7A1-209ENST00000474432 A0A087WWV3 80 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 C19orf67A6NJJ6 358 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 SRGAP2CP0DJJ0 459 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 SPATA31C1P0DKV0 1188 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 RBM25P49756 843 aaKnown RBP20.73■□□□□ 0.91
COL7A1-209ENST00000474432 ZP2Q05996 745 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 SMAD2Q15796 467 aaKnown RBP20.73■□□□□ 0.91
COL7A1-209ENST00000474432 UBXN11Q5T124 520 aa20.73■□□□□ 0.91
COL7A1-209ENST00000474432 CATSPER4Q7RTX7 472 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms