RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 NOC2LQ9Y3T9 749 aaKnown RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 SPEF2Q9C093 1822 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 DENND3A2RUS2 1198 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 FAM86B1E9PN63 330 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 SART1O43290 800 aaKnown RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 KRT14P02533 472 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 FAM86B2P0C5J1 330 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 YBX3P16989 372 aaKnown RBP eCLIP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 TMOD1P28289 359 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 PIK3CAP42336 1068 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 FMO5P49326 533 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 TRIP13Q15645 432 aaPredicted RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 DDX42Q86XP3 938 aaKnown RBP eCLIP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 RPUSD2Q8IZ73 545 aaKnown RBP12.56□□□□□ -0.4
NPHP4-204ENST00000460696 METTL13Q8N6R0 699 aa12.56□□□□□ -0.4
NPHP4-204ENST00000460696 CCDC188H7C350 402 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 DAPK3O43293 454 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 KIF22Q14807 665 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 UAP1Q16222 522 aaPredicted RBP12.55□□□□□ -0.4
NPHP4-204ENST00000460696 SLC7A3Q8WY07 619 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 TUFT1Q9NNX1 390 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 RNF146Q9NTX7 359 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 PCDHB4Q9Y5E5 795 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 CAPN7Q9Y6W3 813 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 AHDC1Q5TGY3 1603 aaPredicted RBP12.55□□□□□ -0.4
NPHP4-204ENST00000460696 STRCP1A6NGW2 1772 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 COL1A1P02452 1464 aaPredicted RBP12.55□□□□□ -0.4
NPHP4-204ENST00000460696 ZBTB39O15060 712 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 ADCY1Q08828 1119 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 NAB2Q15742 525 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 TRIM59Q8IWR1 403 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 IPO4Q8TEX9 1081 aaKnown RBP12.55□□□□□ -0.4
NPHP4-204ENST00000460696 ZKSCAN4Q969J2 545 aaPredicted RBP12.55□□□□□ -0.4
NPHP4-204ENST00000460696 NKIRAS1Q9NYS0 192 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 REXO2Q9Y3B8 237 aaKnown RBP12.55□□□□□ -0.4
NPHP4-204ENST00000460696 NID2Q14112 1375 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 WDR64B1ANS9 1081 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 MYO1CO00159 1063 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 PPFIA4O75335 1185 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 ARP10275 920 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 IFT88Q13099 833 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 MIIPQ5JXC2 388 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 HDAC7Q8WUI4 952 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.55□□□□□ -0.47e-7■■□□□ 13.4
NPHP4-204ENST00000460696 GABBR1Q9UBS5 961 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 MYO3BQ8WXR4 1341 aa12.55□□□□□ -0.4
NPHP4-204ENST00000460696 NPEPPSP55786 919 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 CLUL1Q15846 466 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 NAGPAQ9UK23 515 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 PON1P27169 355 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 SREBF1P36956 1147 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 MKRN4PQ13434 485 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 MEA1Q16626 185 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 SGO2Q562F6 1265 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 SNRNP48Q6IEG0 339 aaKnown RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 APTXQ7Z2E3 356 aaKnown RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 FAM151AQ8WW52 585 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 FAM213AQ9BRX8 229 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 PARP2Q9UGN5 583 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 VGLL3A8MV65 326 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 KCNA1Q09470 495 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 ECM1Q16610 540 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 SLC35G1Q2M3R5 365 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 TMEM119Q4V9L6 283 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 NBPF12Q5TAG4 269 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 LMBRD2Q68DH5 695 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 SWSAP1Q6NVH7 229 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 WDR93Q6P2C0 686 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 RHOT2Q8IXI1 618 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 TAF1DQ9H5J8 278 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 TBC1D22BQ9NU19 505 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 PDE2AO00408 941 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 CASP5P51878 434 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 OSTNP61366 133 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 PLA2G4FQ68DD2 849 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 CYFIP1Q7L576 1253 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.54□□□□□ -0.4
NPHP4-204ENST00000460696 RFFLQ8WZ73 363 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 EHD4Q9H223 541 aa12.54□□□□□ -0.4
NPHP4-204ENST00000460696 BAZ2AQ9UIF9 1905 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 PASKQ96RG2 1323 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 PHRF1Q9P1Y6 1649 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 K7ERI5 159 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 RAD51CO43502 376 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CD58P19256 250 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 HMGCS2P54868 508 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 GPC5P78333 572 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 CUL1Q13616 776 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ZNF394Q53GI3 561 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 BRDTQ58F21 947 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 C15orf52Q6ZUT6 534 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 SLC35G2Q8TBE7 412 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ADARB2Q9NS39 739 aaKnown RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 APEX2Q9UBZ4 518 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 FEZ2Q9UHY8 353 aaPredicted RBP12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ZNF148Q9UQR1 794 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 SIK3Q9Y2K2 1263 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 ABCC6O95255 1503 aa12.53□□□□□ -0.4
NPHP4-204ENST00000460696 KIAA0100Q14667 2235 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms