RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 PRCCQ92733 491 aaPredicted RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 ERP44Q9BS26 406 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 TXLNGYQ9BZA5 131 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 CTNNAL1Q9UBT7 734 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 SERPINB13Q9UIV8 391 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 TNRC6CQ9HCJ0 1690 aaKnown RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 BTNL10A8MVZ5 291 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 RPS6KA4O75676 772 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 TNIP1Q15025 636 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 AGBL2Q5U5Z8 902 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 DUPD1Q68J44 220 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 TPH2Q8IWU9 490 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 SPICE1Q8N0Z3 855 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 MYCT1Q8N699 235 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 C1orf131Q8NDD1 294 aaKnown RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 ATXN2LQ8WWM7 1075 aaKnown RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 DDX23Q9BUQ8 820 aaKnown RBP22.72■■□□□ 1.23
CTCF-202ENST00000401394 SUFUQ9UMX1 484 aa22.72■■□□□ 1.23
CTCF-202ENST00000401394 IGKV6D-41A0A0C4DH26 115 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 PPFIA2O75334 1257 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 TRIM37O94972 964 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 SMARCA1P28370 1054 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 ORC2Q13416 577 aaPredicted RBP22.71■■□□□ 1.23
CTCF-202ENST00000401394 CNBD1Q8NA66 436 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 FAM129AQ9BZQ8 928 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 PCIF1Q9H4Z3 704 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 THRAP3Q9Y2W1 955 aaKnown RBP22.71■■□□□ 1.23
CTCF-202ENST00000401394 C5orf60A6NFR6 353 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 CCDC188H7C350 402 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 KCNJ2P63252 427 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 ELF3P78545 371 aaPredicted RBP22.71■■□□□ 1.23
CTCF-202ENST00000401394 IKQ13123 557 aaPredicted RBP22.71■■□□□ 1.23
CTCF-202ENST00000401394 PHLDB3Q6NSJ2 640 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 TAX1BP1Q86VP1 789 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 FAM186BQ8IYM0 893 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 SYT2Q8N9I0 419 aaPredicted RBP22.71■■□□□ 1.23
CTCF-202ENST00000401394 HOOK2Q96ED9 719 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 STAMBPL1Q96FJ0 436 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 DNAJC18Q9H819 358 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 TRIM33Q9UPN9 1127 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 KIAA0391O15091 583 aaKnown RBP22.71■■□□□ 1.23
CTCF-202ENST00000401394 SOX5P35711 763 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 PPATQ06203 517 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 SEPT2Q15019 361 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 LONRF1Q17RB8 773 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 SLITRK6Q9H5Y7 841 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 ALG6Q9Y672 507 aa22.71■■□□□ 1.23
CTCF-202ENST00000401394 ZMYM2Q9UBW7 1377 aa22.7■■□□□ 1.23
CTCF-202ENST00000401394 MSH4O15457 936 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 CTNNBL1Q8WYA6 563 aaPredicted RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 THOC1Q96FV9 657 aaKnown RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 GRHL1Q9NZI5 618 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 CCNL1Q9UK58 526 aaPredicted RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 EEF2P13639 858 aaKnown RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 PTENP60484 403 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 MESDQ14696 234 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 TRIP13Q15645 432 aaPredicted RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 IFI16Q16666 785 aaKnown RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 PRELID2Q8N945 189 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 SEC14L1Q92503 715 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 WRAP73Q9P2S5 460 aaPredicted RBP22.7■■□□□ 1.22
CTCF-202ENST00000401394 GGA1Q9UJY5 639 aa22.7■■□□□ 1.22
CTCF-202ENST00000401394 GDF11O95390 407 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 ELF1P32519 619 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 KIAA1755Q5JYT7 1200 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 DAB2IPQ5VWQ8 1189 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 NSMFQ6X4W1 530 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 RPGRQ92834 1020 aaKnown RBP22.69■■□□□ 1.22
CTCF-202ENST00000401394 FAM118BQ9BPY3 351 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 BZW2Q9Y6E2 419 aaKnown RBP22.69■■□□□ 1.22
CTCF-202ENST00000401394 MYO3BQ8WXR4 1341 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 CCT8L1PA6NM43 557 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 CES2O00748 559 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 PPIP5K2O43314 1243 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 CALUO43852 315 aaPredicted RBP22.69■■□□□ 1.22
CTCF-202ENST00000401394 MTMR3Q13615 1198 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 BORCS6Q96GS4 357 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 CRAMP1Q96RY5 1269 aa22.69■■□□□ 1.22
CTCF-202ENST00000401394 TYW1Q9NV66 732 aaKnown RBP22.69■■□□□ 1.22
CTCF-202ENST00000401394 CDK5RAP2Q96SN8 1893 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 PDXKO00764 312 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 DENND2CQ68D51 928 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 MSL1Q68DK7 614 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 ARHGAP27Q6ZUM4 889 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 VPS36Q86VN1 386 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 RFFLQ8WZ73 363 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 FAM114A2Q9NRY5 505 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 PKD2L1Q9P0L9 805 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 NRAPQ86VF7 1730 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 ARFGEF1Q9Y6D6 1849 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 RGS16O15492 202 aaPredicted RBP22.68■■□□□ 1.22
CTCF-202ENST00000401394 TBCAO75347 108 aaKnown RBP22.68■■□□□ 1.22
CTCF-202ENST00000401394 ACSL3O95573 720 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 FMO5P49326 533 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 SNX1Q13596 522 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 ZKSCAN8Q15776 578 aaPredicted RBP22.68■■□□□ 1.22
CTCF-202ENST00000401394 PRR5LQ6MZQ0 368 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 RINT1Q6NUQ1 792 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 CCDC197Q8NCU1 140 aa22.68■■□□□ 1.22
CTCF-202ENST00000401394 TBC1D16Q8TBP0 767 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms