RNA–Protein interactions for RNA: ENST00000396625.3

COL4A4-201, Transcript of collagen type IV alpha 4 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A4, Length 9,895 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4-201ENST00000396625 GCOM2Q9BZD3 368 aaPredicted RBP10.97□□□□□ -0.65
COL4A4-201ENST00000396625 SLC13A1Q9BZW2 595 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 TNNQ9UQP3 1299 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 LRRC36Q1X8D7 754 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 RNF135Q8IUD6 432 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 DBNDD2Q9BQY9 259 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 RSPH10B2B2RC85 870 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 RSPH10BP0C881 870 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 AGR3Q8TD06 166 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 ANKRD65E5RJM6 399 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 ENO1P06733 434 aaKnown RBP10.97□□□□□ -0.65
COL4A4-201ENST00000396625 KCNA2P16389 499 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 PRAMEP78395 509 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 MRPL1Q9BYD6 325 aaKnown RBP10.97□□□□□ -0.65
COL4A4-201ENST00000396625 SH3TC1Q8TE82 1336 aa10.97□□□□□ -0.65
COL4A4-201ENST00000396625 COPB2P35606 906 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 ZNF658Q5TYW1 1059 aaPredicted RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 CASP10Q92851 521 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 CCT7Q99832 543 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 RNPEPQ9H4A4 650 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 AS3MTQ9HBK9 375 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 NXF1Q9UBU9 619 aaKnown RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 LRFN2Q9ULH4 789 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 ARHGEF37A1IGU5 675 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 PALMO75781 387 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 FMNL1O95466 1100 aaPredicted RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 GPS1Q13098 491 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 TNFAIP1Q13829 316 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 TBC1D22AQ8WUA7 517 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 KDM5BQ9UGL1 1544 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 KDSRQ06136 332 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 MFSD14BQ5SR56 506 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 NIM1KQ8IY84 436 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 PLBD2Q8NHP8 589 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 MTERF3Q96E29 417 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 DEPDC7Q96QD5 511 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 SMAD5Q99717 465 aaKnown RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 PFKFB2O60825 505 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 EIF4A2Q14240 407 aaKnown RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 ZNF467Q7Z7K2 595 aaPredicted RBP10.96□□□□□ -0.65
COL4A4-201ENST00000396625 LARGE2Q8N3Y3 721 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 TNIP2Q8NFZ5 429 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 ANKRD49Q8WVL7 239 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 CEP95Q96GE4 821 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 HPS4Q9NQG7 708 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 NRBP2Q9NSY0 501 aa10.96□□□□□ -0.65
COL4A4-201ENST00000396625 RNF103O00237 685 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 ARFIP2P53365 341 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 RPS6P62753 249 aaKnown RBP10.96□□□□□ -0.66
COL4A4-201ENST00000396625 CNGA2Q16280 664 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 PTPN21Q16825 1174 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.96□□□□□ -0.664e-7■■■■■ 58.1
COL4A4-201ENST00000396625 SH3KBP1Q96B97 665 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 KIF2CQ99661 725 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 SYBUQ9NX95 663 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 KRT77Q7Z794 578 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 FBXO11Q86XK2 927 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 RTL3Q8N8U3 475 aaKnown RBP10.96□□□□□ -0.66
COL4A4-201ENST00000396625 PNMA1Q8ND90 353 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 LCMT1Q9UIC8 334 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 PCDHGB4Q9UN71 923 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 TCP11X1B4DZS4 312 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 RECQLP46063 649 aaPredicted RBP10.96□□□□□ -0.66
COL4A4-201ENST00000396625 PABPC4Q13310 644 aaKnown RBP eCLIP10.96□□□□□ -0.66
COL4A4-201ENST00000396625 TMC5Q6UXY8 1006 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 SRLQ86TD4 932 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 MFN1Q8IWA4 741 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 AK8Q96MA6 479 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 ZNF577Q9BSK1 485 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 MAD2L2Q9UI95 211 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 HEY1Q9Y5J3 304 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 DMPKQ09013 629 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 PCDHA1Q9Y5I3 950 aa10.96□□□□□ -0.66
COL4A4-201ENST00000396625 INO80B-WBP1J3KQ70 363 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 INO80BQ9C086 356 aaPredicted RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 THAP9Q9H5L6 903 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 MBD2Q9UBB5 411 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 F5H423 210 aaPredicted RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 IKBKBO14920 756 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 CYTH3O43739 400 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 KIF23Q02241 960 aaPredicted RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 TMA16Q96EY4 203 aaKnown RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 RBM41Q96IZ5 413 aaKnown RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 DCAF5Q96JK2 942 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 PRMT1Q99873 361 aaKnown RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 KLRF2D3W0D1 207 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 POTEAQ6S8J7 498 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 C11orf57Q6ZUT1 292 aaPredicted RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 VSTM4Q8IW00 320 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 BLMP54132 1417 aaPredicted RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 PDE8AO60658 829 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 KLHL18O94889 574 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 PLOD1Q02809 727 aaPredicted RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 MKRN3Q13064 507 aaKnown RBP10.95□□□□□ -0.66
COL4A4-201ENST00000396625 TMEM154Q6P9G4 183 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 TOGARAM2Q6ZUX3 1019 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 ARMCX2Q7L311 632 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 FAM162AQ96A26 154 aa10.95□□□□□ -0.66
COL4A4-201ENST00000396625 TADA1Q96BN2 335 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms