RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 CROTQ9UKG9 612 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 DSEQ9UL01 958 aa5.9□□□□□ -1.46
USP48-202ENST00000374730 LAS1LQ9Y4W2 734 aaKnown RBP5.9□□□□□ -1.46
USP48-202ENST00000374730 MAP3K19Q56UN5 1328 aa5.9□□□□□ -1.47
USP48-202ENST00000374730 IGSF1Q8N6C5 1336 aa5.9□□□□□ -1.47
USP48-202ENST00000374730 NFAT5O94916 1531 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 MED1Q15648 1581 aaPredicted RBP5.89□□□□□ -1.47
USP48-202ENST00000374730 LMO7Q8WWI1 1683 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 CAMTA1Q9Y6Y1 1673 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 KDM3BQ7LBC6 1761 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 TRBV23-1A0A0A0MS06 115 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 CYP1A1P04798 512 aaPredicted RBP5.89□□□□□ -1.47
USP48-202ENST00000374730 CHGBP05060 677 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 NAT1P18440 290 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 SERINC3Q13530 473 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 ZNF827Q17R98 1081 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 TBC1D10BQ4KMP7 808 aaPredicted RBP5.89□□□□□ -1.47
USP48-202ENST00000374730 HSP90AB2PQ58FF8 381 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 PKN3Q6P5Z2 889 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 TMC5Q6UXY8 1006 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 KCTD1Q719H9 257 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.89□□□□□ -1.47
USP48-202ENST00000374730 TTC9BQ8N6N2 239 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 C8orf58Q8NAV2 365 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 MBD6Q96DN6 1003 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 KCNJ15Q99712 375 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 CDC6Q99741 560 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 TMEM168Q9H0V1 697 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 IPPKQ9H8X2 491 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 INVSQ9Y283 1065 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 TUBGCP6Q96RT7 1819 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 PTPRCP08575 1304 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 ADGRL3Q9HAR2 1447 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 ATP10DQ9P241 1426 aa5.89□□□□□ -1.47
USP48-202ENST00000374730 KIF1AQ12756 1690 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 FAM83GA6ND36 823 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 NKRFO15226 690 aaKnown RBP eCLIP5.88□□□□□ -1.47
USP48-202ENST00000374730 HTATSF1O43719 755 aaKnown RBP5.88□□□□□ -1.47
USP48-202ENST00000374730 C6orf222P0C671 652 aaPredicted RBP5.88□□□□□ -1.47
USP48-202ENST00000374730 COL6A2P12110 1019 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 GRIN1Q05586 938 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 PAK1Q13153 545 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 RASA3Q14644 834 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 BMP2KLQ5H9B9 411 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 ZC3H12BQ5HYM0 836 aaKnown RBP5.88□□□□□ -1.47
USP48-202ENST00000374730 HHIPL2Q6UWX4 724 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 CHD1LQ86WJ1 897 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 KLHL36Q8N4N3 616 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 NGDNQ8NEJ9 315 aaKnown RBP5.88□□□□□ -1.47
USP48-202ENST00000374730 FTSJ1Q9UET6 329 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 PFDN2Q9UHV9 154 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 TRAF6Q9Y4K3 522 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 TELO2Q9Y4R8 837 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 SOS1Q07889 1333 aaPredicted RBP5.88□□□□□ -1.47
USP48-202ENST00000374730 PXDNLA1KZ92 1463 aa5.88□□□□□ -1.47
USP48-202ENST00000374730 TRPM3Q9HCF6 1732 aaPredicted RBP5.88□□□□□ -1.47
USP48-202ENST00000374730 CCDC85CA6NKD9 419 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 B4GALT3O60512 393 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 LTFP02788 710 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 COL6A1P12109 1028 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 KCNA6P17658 529 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 GTF2F1P35269 517 aaKnown RBP eCLIP5.87□□□□□ -1.47
USP48-202ENST00000374730 GABREP78334 506 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 RBL2Q08999 1139 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 DCTN1Q14203 1278 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 CD276Q5ZPR3 534 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 TRMT10BQ6PF06 316 aaKnown RBP5.87□□□□□ -1.47
USP48-202ENST00000374730 MTDHQ86UE4 582 aaKnown RBP5.87□□□□□ -1.47
USP48-202ENST00000374730 SAMD11Q96NU1 681 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 RBPJLQ9UBG7 517 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 SLIT3O75094 1523 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 RGPD2P0DJD1 1756 aa5.87□□□□□ -1.47
USP48-202ENST00000374730 NCAPD2Q15021 1401 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 NCOA3Q9Y6Q9 1424 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 ARVCFO00192 962 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 LAMTOR5O43504 91 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 EIF5BO60841 1220 aaKnown RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 ENO2P09104 434 aaPredicted RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 MAGEA10P43363 369 aaPredicted RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 SMAD2Q15796 467 aaKnown RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 SKIDA1Q1XH10 827 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 MTHFSDQ2M296 383 aaKnown RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 FAM209AQ5JX71 171 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 FOXB2Q5VYV0 432 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 RBM12BQ8IXT5 1001 aaKnown RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 NLGN4XQ8N0W4 816 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 EXOC2Q96KP1 924 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 DEPDC7Q96QD5 511 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 SSBP3Q9BWW4 388 aaPredicted RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 C22orf23Q9BZE7 217 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 BARX1Q9HBU1 254 aaPredicted RBP5.86□□□□□ -1.47
USP48-202ENST00000374730 BABAM1Q9NWV8 329 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 SMPD4Q9NXE4 827 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 SRPK3Q9UPE1 567 aa5.86□□□□□ -1.47
USP48-202ENST00000374730 SIPA1L3O60292 1781 aaPredicted RBP5.85□□□□□ -1.47
USP48-202ENST00000374730 ADAMTS7Q9UKP4 1686 aa5.85□□□□□ -1.47
USP48-202ENST00000374730 OVOS2A0A0G2JMS6 1433 aa5.85□□□□□ -1.47
USP48-202ENST00000374730 MSH6P52701 1360 aa5.85□□□□□ -1.47
USP48-202ENST00000374730 MAP3K5Q99683 1374 aa5.85□□□□□ -1.47
USP48-202ENST00000374730 ZNF839A8K0R7 811 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms