RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 GCOM2Q9BZD3 368 aaPredicted RBP16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 MINDY3Q9H8M7 445 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 BLOC1S4Q9NUP1 217 aa16.74■□□□□ 0.27
SMPDL3A-201ENST00000368440 ENPP3O14638 875 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 MYOGP15173 224 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 ATL3Q6DD88 541 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 RINT1Q6NUQ1 792 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 FAM117BQ6P1L5 589 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 YBX2Q9Y2T7 364 aaKnown RBP16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 CHD9Q3L8U1 2897 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 GPR182O15218 404 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 SLC26A4O43511 780 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 SSBP05455 408 aaKnown RBP eCLIP16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 PLA2G4BP0C869 781 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 SLC12A3P55017 1021 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 CDC42EP1Q00587 391 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 SYT2Q8N9I0 419 aaPredicted RBP16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 RASSF8Q8NHQ8 419 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 PHOSPHO2Q8TCD6 241 aa16.73■□□□□ 0.27
SMPDL3A-201ENST00000368440 COL4A6Q14031 1691 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 A0A087X0B3 334 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 ASAP2O43150 1006 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 AMHP03971 560 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 DNAJB2P25686 324 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 DSC3Q14574 896 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 MXD4Q14582 209 aaPredicted RBP16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 AXDND1Q5T1B0 1012 aaPredicted RBP16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 C1orf186Q6ZWK4 172 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 DAW1Q8N136 415 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 FTHL17Q9BXU8 183 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 RCOR1Q9UKL0 485 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 CFAP45Q9UL16 551 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 PCDHA7Q9UN72 937 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 MYH11P35749 1972 aa16.72■□□□□ 0.27
SMPDL3A-201ENST00000368440 TTC3P53804 2025 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 UPP2O95045 317 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 NCLP19338 710 aaKnown RBP16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 RAD51AP2Q09MP3 1159 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 MAPK7Q13164 816 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 DHX8Q14562 1220 aaKnown RBP16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 MCM6Q14566 821 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 SHC4Q6S5L8 630 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 KCNG4Q8TDN1 519 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 RAD54LQ92698 747 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 ADAM2Q99965 735 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 TSPYL2Q9H2G4 693 aaPredicted RBP16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 NPHP3-ACAD11A0A0J9YXS1 232 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 CUTAO60888 179 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 HIP1RO75146 1068 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 ARHGEF15O94989 841 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 GJB5O95377 273 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 PTENP60484 403 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 NAALADL2Q58DX5 795 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 ARSHQ5FYA8 562 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 ODR4Q5SWX8 454 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 KCTD17Q8N5Z5 321 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 LEO1Q8WVC0 666 aaPredicted RBP16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 TOP1MTQ969P6 601 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 PANK2Q9BZ23 570 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 NKX2-4Q9H2Z4 354 aa16.71■□□□□ 0.27
SMPDL3A-201ENST00000368440 LCHNA4D1U4 455 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 LRRIQ4A6NIV6 560 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 IBSPP21815 317 aaPredicted RBP16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 SFPQP23246 707 aaKnown RBP eCLIP16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 PHKA2P46019 1235 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 ME1P48163 572 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 KRT85P78386 507 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 NUCB2P80303 420 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 CACNB1Q02641 598 aaPredicted RBP16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 TFDP1Q14186 410 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 CATSPER4Q7RTX7 472 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 SRGAP1Q7Z6B7 1085 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 RGS18Q9NS28 235 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 PCDHA11Q9Y5I1 949 aa16.7■□□□□ 0.26
SMPDL3A-201ENST00000368440 DENND3A2RUS2 1198 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 TXLNAP40222 546 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 MBTD1Q05BQ5 628 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 Q7L0L9 218 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 GPBP1Q86WP2 473 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 IFNLR1Q8IU57 520 aaPredicted RBP16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 CRIPAKQ8N1N5 446 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 PDILTQ8N807 584 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 LARP4BQ92615 738 aaKnown RBP16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 ZBED2Q9BTP6 218 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 KIFC3Q9BVG8 833 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 INO80BQ9C086 356 aaPredicted RBP16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 CCDC39Q9UFE4 941 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 ADGRA3Q8IWK6 1321 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 C9IYK1 514 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 TLL1O43897 1013 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 CA3P07451 260 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 GUCY2CP25092 1073 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 POU5F1BQ06416 359 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 RAB30Q15771 203 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 RRAGBQ5VZM2 374 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 SPRED2Q7Z698 418 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 KIFAP3Q92845 792 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 TIFAQ96CG3 184 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 SPATA32Q96LK8 384 aa16.69■□□□□ 0.26
SMPDL3A-201ENST00000368440 TTYH1Q9H313 450 aaPredicted RBP16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms