RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FBXO25Q8TCJ0 367 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 PI4KBQ9UBF8 816 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 SLITRK3O94933 977 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 FTLP02792 175 aaPredicted RBP13.14□□□□□ -0.31
CLIP3-201ENST00000360535 FGFR4P22455 802 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 JAM2P57087 298 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 VPS72Q15906 364 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 RFFLQ8WZ73 363 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 KAT5Q92993 513 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 WDR18Q9BV38 432 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 GLT8D2Q9H1C3 349 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 MLXIPLQ9NP71 852 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 COG5Q9UP83 839 aa13.14□□□□□ -0.31
CLIP3-201ENST00000360535 PLIN4Q96Q06 1357 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 LMNB1P20700 586 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 PRKCIP41743 596 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 ADCY1Q08828 1119 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 MTMR3Q13615 1198 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 SH3BP5LQ7L8J4 393 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 OTUD6AQ7L8S5 288 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 CACNA2D3Q8IZS8 1091 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 ZSWIM2Q8NEG5 633 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 SEC16BQ96JE7 1060 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 PSMD1Q99460 953 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 AZI2Q9H6S1 392 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 VAV3Q9UKW4 847 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 ALG6Q9Y672 507 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 CYP3A7-CYP3A51PA0A087WV96 503 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 CALCAP01258 141 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 CYP3A7P24462 503 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 PHLDB3Q6NSJ2 640 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 DCAF4Q8WV16 495 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 HES6Q96HZ4 224 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 CALR3Q96L12 384 aaKnown RBP13.13□□□□□ -0.31
CLIP3-201ENST00000360535 FAM20AQ96MK3 541 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 STK33Q9BYT3 514 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 HAUS2Q9NVX0 235 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 WRAP73Q9P2S5 460 aaPredicted RBP13.13□□□□□ -0.31
CLIP3-201ENST00000360535 SCAF8Q9UPN6 1271 aaKnown RBP13.13□□□□□ -0.31
CLIP3-201ENST00000360535 MYH11P35749 1972 aa13.13□□□□□ -0.31
CLIP3-201ENST00000360535 K7ENM7 598 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SREBF1P36956 1147 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 IFI35P80217 286 aaPredicted RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SNX1Q13596 522 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SLC29A2Q14542 456 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 LRIG3Q6UXM1 1119 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SLITRK6Q9H5Y7 841 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 FAM114A2Q9NRY5 505 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 FAM198AQ9UFP1 575 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 PRR12Q9ULL5 1215 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 STXBP5LQ9Y2K9 1186 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 EMSYQ7Z589 1322 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 A0A1W2PRG0 241 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 ARHGEF35A5YM69 484 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 TMEM150BA6NC51 233 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 VIMP08670 466 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 DENND2CQ68D51 928 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 FOXR2Q6PJQ5 311 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SP8Q8IXZ3 490 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 CCDC105Q8IYK2 499 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 CERKQ8TCT0 537 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 CCDC127Q96BQ5 260 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 FAM84AQ96KN4 292 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 RAB17Q9H0T7 212 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 AGPAT3Q9NRZ7 376 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 LOC102724159A0A0B4J2E5 919 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 FOXO6A8MYZ6 492 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 TCP10L2B9ZVM9 353 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 OPLAHO14841 1288 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 ARP10275 920 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 RDXP35241 583 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 FNTAP49354 379 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 VPS41P49754 854 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 LRRC14Q15048 493 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 PWP2Q15269 919 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 E2F5Q15329 346 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 RBM26Q5T8P6 1007 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 MEX3CQ5U5Q3 659 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 RPUSD2Q8IZ73 545 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 ACER1Q8TDN7 264 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 POP1Q99575 1024 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SEMA4AQ9H3S1 761 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 SLC12A6Q9UHW9 1150 aa13.12□□□□□ -0.31
CLIP3-201ENST00000360535 DBR1Q9UK59 544 aaKnown RBP13.12□□□□□ -0.31
CLIP3-201ENST00000360535 TCRBV7S2A1N4TA0A589 114 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 CLRN2A0PK11 232 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 DNM1LO00429 736 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 TRAPPC3O43617 180 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 SPOPO43791 374 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 CHN1P15882 459 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 PMS2P54278 862 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 BIRC3Q13489 604 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 TRIP13Q15645 432 aaPredicted RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 Q4G0T1 1027 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 GKAP1Q5VSY0 366 aaPredicted RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 JAMLQ86YT9 394 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ZC3H3Q8IXZ2 948 aaKnown RBP13.11□□□□□ -0.31
CLIP3-201ENST00000360535 PPM1KQ8N3J5 372 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 ZNF577Q9BSK1 485 aa13.11□□□□□ -0.31
CLIP3-201ENST00000360535 OSBPL7Q9BZF2 842 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms