RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 TSKSQ9UJT2 592 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 DENND3A2RUS2 1198 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 MYADML2A6NDP7 307 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 GAS2O43903 313 aaKnown RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 FGFR1OPO95684 399 aaKnown RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 NR2F2P24468 414 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 CNGA1P29973 690 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 CCND3P30281 292 aaPredicted RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 ADAM9Q13443 819 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 FSCN1Q16658 493 aaKnown RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 PTPN21Q16825 1174 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 FAM114A1Q8IWE2 563 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 ANKRD20A12PQ8NF67 263 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 PRPF31Q8WWY3 499 aaKnown RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 CEP63Q96MT8 703 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 ACCSQ96QU6 501 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 GBP3Q9H0R5 595 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 TMEM206Q9H813 350 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 AGPAT3Q9NRZ7 376 aa20.46■□□□□ 0.87
CLN3-206ENST00000360019 MAGEC2Q9UBF1 373 aaPredicted RBP20.46■□□□□ 0.87
CLN3-206ENST00000360019 COL1A2P08123 1366 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 CLIC2O15247 247 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 HMGCRP04035 888 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 HSPA6P17066 643 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 NAMPTP43490 491 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 CAPSQ13938 189 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 IER5Q5VY09 327 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 MAP4K3Q8IVH8 894 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 RAET1EQ8TD07 263 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 JPH2Q9BR39 696 aaPredicted RBP20.45■□□□□ 0.86
CLN3-206ENST00000360019 VPS16Q9H269 839 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 RTN4Q9NQC3 1192 aaKnown RBP20.45■□□□□ 0.86
CLN3-206ENST00000360019 TBX20Q9UMR3 447 aa20.45■□□□□ 0.86
CLN3-206ENST00000360019 TEX33O43247 280 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 NR3C1P04150 777 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 GJA9P57773 515 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 PPFIA1Q13136 1202 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 NFIL3Q16649 462 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 BRDTQ58F21 947 aaPredicted RBP20.44■□□□□ 0.86
CLN3-206ENST00000360019 MAP3K21Q5TCX8 1036 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 HS2ST1Q7LGA3 356 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 TAS1R3Q7RTX0 852 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 FILIP1Q7Z7B0 1213 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 DRC7Q8IY82 874 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 SYCP3Q8IZU3 236 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 HVCN1Q96D96 273 aa20.44■□□□□ 0.86
CLN3-206ENST00000360019 TISP43B9A030 160 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 CETN3O15182 167 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 TPM3P06753 285 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 MYL3P08590 195 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 KLRC1P26715 233 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 MAP2K1Q02750 393 aaPredicted RBP20.43■□□□□ 0.86
CLN3-206ENST00000360019 PPP2R5AQ15172 486 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 GRIK4Q16099 956 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 EFCAB12Q6NXP0 572 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 PXYLP1Q8TE99 480 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 TCP11Q8WWU5 503 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 KCNN1Q92952 543 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 TUBGCP2Q9BSJ2 902 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 KCNG1Q9UIX4 513 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 LRRIQ4A6NIV6 560 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 N4BP3O15049 544 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 C6orf222P0C671 652 aaPredicted RBP20.43■□□□□ 0.86
CLN3-206ENST00000360019 CLCN3P51790 818 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 KIAA0753Q2KHM9 967 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 MARCH8Q5T0T0 291 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 VSTM4Q8IW00 320 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 METTL13Q8N6R0 699 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 LINC01465Q8N7H1 131 aa20.43■□□□□ 0.86
CLN3-206ENST00000360019 PSPC1Q8WXF1 523 aaKnown RBP20.43■□□□□ 0.86
CLN3-206ENST00000360019 UPF3AQ9H1J1 476 aaKnown RBP20.43■□□□□ 0.86
CLN3-206ENST00000360019 SUCLA2Q9P2R7 463 aaPredicted RBP20.43■□□□□ 0.86
CLN3-206ENST00000360019 HAS3O00219 553 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 PGK1P00558 417 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 RARBP10826 455 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 MTIF2P46199 727 aaKnown RBP20.42■□□□□ 0.86
CLN3-206ENST00000360019 MARSP56192 900 aaKnown RBP20.42■□□□□ 0.86
CLN3-206ENST00000360019 LAMTOR4Q0VGL1 99 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 MFSD10Q14728 455 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 FILIP1LQ4L180 1135 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 GOLGA5Q8TBA6 731 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 PPP1R13LQ8WUF5 828 aa20.42■□□□□ 0.86
CLN3-206ENST00000360019 MAGEB2O15479 319 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 AKAP3O75969 853 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 GNA14O95837 355 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 GJB1P08034 283 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 PRKCSHP14314 528 aaPredicted RBP20.41■□□□□ 0.86
CLN3-206ENST00000360019 RPL13P26373 211 aaKnown RBP20.41■□□□□ 0.86
CLN3-206ENST00000360019 CASP4P49662 377 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 NKX3-2P78367 333 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 PURAQ00577 322 aaKnown RBP20.41■□□□□ 0.86
CLN3-206ENST00000360019 MXD4Q14582 209 aaPredicted RBP20.41■□□□□ 0.86
CLN3-206ENST00000360019 MIIPQ5JXC2 388 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 MTHFD1LQ6UB35 978 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 TMC6Q7Z403 805 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 RETREG2Q8NC44 543 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 DEPTORQ8TB45 409 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 SETD4Q9NVD3 440 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 DMAC2Q9NW81 257 aa20.41■□□□□ 0.86
CLN3-206ENST00000360019 EVPLQ92817 2033 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms