RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 C16orf87Q6PH81 154 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 LRIG3Q6UXM1 1119 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 ZNF564Q8TBZ8 553 aaPredicted RBP20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 SGSM3Q96HU1 749 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 BTBD6Q96KE9 485 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 CD248Q9HCU0 757 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RIMBP3CA6NJZ7 1639 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RIMBP3BA6NNM3 1639 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 RIMBP3Q9UFD9 1639 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 USP31Q70CQ4 1352 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 MCF2P10911 925 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 NOP14P78316 857 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 TRPM8Q7Z2W7 1104 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 CCDC124Q96CT7 223 aaKnown RBP20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 BRIP1Q9BX63 1249 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 FSCBQ5H9T9 825 aa20.86■□□□□ 0.93
CCDC88B-202ENST00000356786 HSPA8P11142 646 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 IL6STP40189 918 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 MECOMQ03112 1051 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 KCNB1Q14721 858 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 DOK7Q18PE1 504 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 NRBP2Q9NSY0 501 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 GJA3Q9Y6H8 435 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 PNMA6FA0A0J9YX94 578 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 SLC12A1Q13621 1099 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 OR6B2Q6IFH4 312 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 MYLK4Q86YV6 388 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 C1orf54Q8WWF1 131 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 IPO11Q9UI26 975 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 SNAP23O00161 211 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 SRGNP10124 158 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 USP49Q70CQ1 688 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 PPM1NQ8N819 430 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 PGM1P36871 562 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 KPNA2P52292 529 aaKnown RBP20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 PLCB4Q15147 1175 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 PTGISQ16647 500 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 KIAA1755Q5JYT7 1200 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 MARCH10Q8NA82 808 aaPredicted RBP20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 ICA1LQ8NDH6 482 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 MTA3Q9BTC8 594 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 L1RE1Q9UN81 338 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 IVNS1ABPQ9Y6Y0 642 aa20.85■□□□□ 0.93
CCDC88B-202ENST00000356786 CCND1P24385 295 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 KNOP1Q1ED39 458 aaKnown RBP20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 KIF2BQ8N4N8 673 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 TRIM51Q9BSJ1 452 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 PIK3C2BO00750 1634 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 IFRD2Q12894 506 aaPredicted RBP20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 PRKG1Q13976 671 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 ERICH1Q86X53 443 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 ZBED8Q8IZ13 594 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 NUP85Q9BW27 656 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 SEMA3FQ13275 785 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 SLC18A3Q16572 532 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 RASSF3Q86WH2 238 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 ENGASEQ8NFI3 743 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 ATP6V1E2Q96A05 226 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 AGLP35573 1532 aa20.84■□□□□ 0.93
CCDC88B-202ENST00000356786 CCT8L1PA6NM43 557 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 ADSSL1Q8N142 457 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 SNF8Q96H20 258 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 HEG1Q9ULI3 1381 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 PSMA2P25787 234 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 OCA2Q04671 838 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 PDIA2Q13087 525 aaKnown RBP20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 GPS1Q13098 491 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 SESTD1Q86VW0 696 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 ANKRD36BP1Q96IX9 119 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 IL25Q9H293 177 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 SLC38A10Q9HBR0 1119 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 PFDN6O15212 129 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 NMT2O60551 498 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 CYP2D6P10635 497 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 C11orf70Q9BRQ4 267 aa20.83■□□□□ 0.93
CCDC88B-202ENST00000356786 CCDC195A0A1B0GUA6 201 aa20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 PI4K2BG5E9Z4 385 aa20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 INO80B-WBP1J3KQ70 363 aa20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 SRGAP2BP0DMP2 458 aa20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 STAT2P52630 851 aa20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 CUL3Q13618 768 aa20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 INO80BQ9C086 356 aaPredicted RBP20.83■□□□□ 0.92
CCDC88B-202ENST00000356786 SSU72P8A0A1W2PR75 194 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 POTEB3A0JP26 581 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 POTECB2RU33 542 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 TCP10L2B9ZVM9 353 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 MED7O43513 233 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 LPXNO60711 386 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 CDK8P49336 464 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 POTEBQ6S5H4 581 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 KLC2Q9H0B6 622 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 TRPV6Q9H1D0 765 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 BMP3P12645 472 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 HOXA13P31271 388 aaPredicted RBP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 ALCAMQ13740 583 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 IZUMO3Q5VZ72 239 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 AGGF1Q8N302 714 aaeCLIP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 FAM96AQ9H5X1 160 aa20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 NGRNQ9NPE2 291 aaKnown RBP20.82■□□□□ 0.92
CCDC88B-202ENST00000356786 NOD1Q9Y239 953 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms