RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PXYLP1Q8TE99 480 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 RAD9AQ99638 391 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 KIAA1683Q9H0B3 1180 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 NSUN3Q9H649 340 aaKnown RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 NCOA5Q9HCD5 579 aaKnown RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 RIC8AQ9NPQ8 531 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 PRMT7Q9NVM4 692 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 WBP1LQ9NX94 342 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 GPN3Q9UHW5 284 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 NRBP1Q9UHY1 535 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 RPAP1Q9BWH6 1393 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 RASGRP1O95267 797 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 ITGAXP20702 1163 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 ARRB1P49407 418 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 USP41Q3LFD5 358 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 PRAMEF19Q5SWL8 479 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 RWDD4Q6NW29 188 aaKnown RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 CYB5D1Q6P9G0 228 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 MAP7D3Q8IWC1 876 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 EXOC6Q8TAG9 804 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 MOCOSQ96EN8 888 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 IQCGQ9H095 443 aaKnown RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 TMEM206Q9H813 350 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 H7C1W4 665 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 CCP110O43303 1012 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 AP1G2O75843 785 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 ARL4AP40617 200 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 GPKOWQ92917 476 aaPredicted RBP eCLIP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 DCUN1D1Q96GG9 259 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 GOLGA6L10A0A0M3HER8 536 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 A8MXQ7 604 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 LETM1O95202 739 aaPredicted RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 FNDC3BQ53EP0 1204 aaKnown RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 GPR161Q8N6U8 529 aaKnown RBP9.08□□□□□ -0.96
HMGB1-203ENST00000341423 DTNBP1Q96EV8 351 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 DNAJC11Q9NVH1 559 aa9.08□□□□□ -0.96
HMGB1-203ENST00000341423 ARVCFO00192 962 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 MOCS2O96007 188 aaPredicted RBP9.07□□□□□ -0.96
HMGB1-203ENST00000341423 THP07101 528 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 TNFAIP3P21580 790 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 CNKSR3Q6P9H4 555 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 OSCP1Q8WVF1 389 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 DHX58Q96C10 678 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 HHIPL1Q96JK4 782 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 CENPKQ9BS16 269 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 RASAL2Q9UJF2 1139 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 PTPRUQ92729 1446 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 CNTNAP1P78357 1384 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 ADCY5O95622 1261 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 DNTTP04053 509 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 QARSP47897 775 aaKnown RBP9.07□□□□□ -0.96
HMGB1-203ENST00000341423 SLC11A2P49281 568 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 SV2CQ496J9 727 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 RD3Q7Z3Z2 195 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 DNERQ8NFT8 737 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 USP33Q8TEY7 942 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 ABCF3Q9NUQ8 709 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 PCDHA6Q9UN73 950 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 PCDHA8Q9Y5H6 950 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 SDSP20132 328 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 PRKAA1Q13131 559 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 PPP1R21Q6ZMI0 780 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 DDI1Q8WTU0 396 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 MYLIPQ8WY64 445 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 FAM81BQ96LP2 452 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 MUC3BQ9H195 1237 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 ACBD3Q9H3P7 528 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 IL23AQ9NPF7 189 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 CHST12Q9NRB3 414 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 APOBEC2Q9Y235 224 aaKnown RBP9.07□□□□□ -0.96
HMGB1-203ENST00000341423 PDE2AO00408 941 aaPredicted RBP9.07□□□□□ -0.96
HMGB1-203ENST00000341423 AKR1B1P15121 316 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 ALCAMQ13740 583 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 SKOR2Q2VWA4 1001 aaPredicted RBP9.07□□□□□ -0.96
HMGB1-203ENST00000341423 ZNF365Q70YC5 407 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 STRADBQ9C0K7 418 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 STAP1Q9ULZ2 295 aa9.07□□□□□ -0.96
HMGB1-203ENST00000341423 TGFB3P10600 412 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 GAP43P17677 238 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 RFC5P40937 340 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 DUSP3P51452 185 aaPredicted RBP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 TSHZ3Q63HK5 1081 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 CYP2U1Q7Z449 544 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 ERCC4Q92889 916 aaPredicted RBP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 SENP7Q9BQF6 1050 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 GPR88Q9GZN0 384 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 SETD4Q9NVD3 440 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 ABI3Q9P2A4 366 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 SF3B1O75533 1304 aaKnown RBP eCLIP9.06□□□□□ -0.964e-8■■□□□ 13.3
HMGB1-203ENST00000341423 SPATA31E1Q6ZUB1 1445 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 NOS2P35228 1153 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 OXCT1P55809 520 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 STAT4Q14765 748 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 PLCL1Q15111 1095 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 GRIK4Q16099 956 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 THEMIS2Q5TEJ8 643 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 PDE12Q6L8Q7 609 aaKnown RBP9.06□□□□□ -0.96
HMGB1-203ENST00000341423 CHMP1BQ7LBR1 199 aa9.06□□□□□ -0.96
HMGB1-203ENST00000341423 TSPYL6Q8N831 410 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms