RNA–Protein interactions for RNA: ENST00000340074.9

UBE3B-201, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,448 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-201ENST00000340074 USP49Q70CQ1 688 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 RNF149Q8NC42 400 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 MCPH1Q8NEM0 835 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 ASAP3Q8TDY4 903 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 TOP1MTQ969P6 601 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 CALML4Q96GE6 196 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 ZBED2Q9BTP6 218 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 POLR3FQ9H1D9 316 aaPredicted RBP16.94■□□□□ 0.3
UBE3B-201ENST00000340074 TSPYL2Q9H2G4 693 aaPredicted RBP16.94■□□□□ 0.3
UBE3B-201ENST00000340074 PCDHA11Q9Y5I1 949 aa16.94■□□□□ 0.3
UBE3B-201ENST00000340074 SPTLC2O15270 562 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 SLC26A4O43511 780 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 TLL1O43897 1013 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 YEATS4O95619 227 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 GLRA2P23416 452 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 DNM1Q05193 864 aaKnown RBP16.93■□□□□ 0.3
UBE3B-201ENST00000340074 CAPSQ13938 189 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 KCTD17Q8N5Z5 321 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 KRI1Q8N9T8 703 aaKnown RBP16.93■□□□□ 0.3
UBE3B-201ENST00000340074 TIFAQ96CG3 184 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 ADAM2Q99965 735 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 INO80BQ9C086 356 aaPredicted RBP16.93■□□□□ 0.3
UBE3B-201ENST00000340074 CCSER1Q9C0I3 900 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 NKX2-4Q9H2Z4 354 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 POLD4Q9HCU8 107 aa16.93■□□□□ 0.3
UBE3B-201ENST00000340074 DENND3A2RUS2 1198 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 PPP6R2O75170 966 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 SFPQP23246 707 aaKnown RBP eCLIP16.92■□□□□ 0.3
UBE3B-201ENST00000340074 TFDP1Q14186 410 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 ZNF697Q5TEC3 545 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 Q7L0L9 218 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 SYT2Q8N9I0 419 aaPredicted RBP16.92■□□□□ 0.3
UBE3B-201ENST00000340074 RASSF8Q8NHQ8 419 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 LRRC15Q8TF66 581 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 SYMPKQ92797 1274 aaKnown RBP16.92■□□□□ 0.3
UBE3B-201ENST00000340074 RUSC1Q9BVN2 902 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 MINDY3Q9H8M7 445 aa16.92■□□□□ 0.3
UBE3B-201ENST00000340074 CA3P07451 260 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 PLCG1P19174 1290 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 PHKA2P46019 1235 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 PTENP60484 403 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 DSC3Q14574 896 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 ATL3Q6DD88 541 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 RINT1Q6NUQ1 792 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 SRGAP1Q7Z6B7 1085 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 DEFB123Q8N688 67 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 FAM161BQ96MY7 647 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 RAD9AQ99638 391 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 TTYH1Q9H313 450 aaPredicted RBP16.91■□□□□ 0.3
UBE3B-201ENST00000340074 RGS18Q9NS28 235 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 CFAP45Q9UL16 551 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 EYSQ5T1H1 3165 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 KIAA1671Q9BY89 1806 aa16.91■□□□□ 0.3
UBE3B-201ENST00000340074 RALGAPA2Q2PPJ7 1873 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 LCHNA4D1U4 455 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 SSBP05455 408 aaKnown RBP eCLIP16.9■□□□□ 0.3
UBE3B-201ENST00000340074 PLA2G4BP0C869 781 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 ZSCAN20P17040 1043 aaPredicted RBP16.9■□□□□ 0.3
UBE3B-201ENST00000340074 IBSPP21815 317 aaPredicted RBP16.9■□□□□ 0.3
UBE3B-201ENST00000340074 SLC12A3P55017 1021 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 FAM43BQ6ZT52 329 aaPredicted RBP16.9■□□□□ 0.3
UBE3B-201ENST00000340074 C1orf186Q6ZWK4 172 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 CATSPER4Q7RTX7 472 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 BSNDQ8WZ55 320 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 CHAMP1Q96JM3 812 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 ZNF576Q9H609 170 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 SLC28A3Q9HAS3 691 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 BLOC1S4Q9NUP1 217 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 TRANK1O15050 2925 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 COL4A6Q14031 1691 aa16.9■□□□□ 0.3
UBE3B-201ENST00000340074 TMEM265A0A087WTH1 108 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 LRRIQ4A6NIV6 560 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 C9IYK1 514 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 TXLNAP40222 546 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 SARSP49591 514 aaKnown RBP16.89■□□□□ 0.29
UBE3B-201ENST00000340074 HTRA4P83105 476 aaPredicted RBP16.89■□□□□ 0.29
UBE3B-201ENST00000340074 POU5F1BQ06416 359 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 PPP2R2DQ66LE6 453 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 SLC24A5Q71RS6 500 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 IFNLR1Q8IU57 520 aaPredicted RBP16.89■□□□□ 0.29
UBE3B-201ENST00000340074 CRIPAKQ8N1N5 446 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 KIFAP3Q92845 792 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 SEMA6BQ9H3T3 888 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 C1orf112Q9NSG2 853 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 INSL6Q9Y581 213 aa16.89■□□□□ 0.29
UBE3B-201ENST00000340074 ARHGEF15O94989 841 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 DDIT3P35638 169 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 MBTD1Q05BQ5 628 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 RAD51AP2Q09MP3 1159 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 DHX8Q14562 1220 aaKnown RBP16.88■□□□□ 0.29
UBE3B-201ENST00000340074 NPAS4Q8IUM7 802 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 KCNG4Q8TDN1 519 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 RAD54LQ92698 747 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 YME1L1Q96TA2 773 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 NFKBIZQ9BYH8 718 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 AGPAT5Q9NUQ2 364 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 CCDC39Q9UFE4 941 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 PIN4Q9Y237 131 aaKnown RBP16.88■□□□□ 0.29
UBE3B-201ENST00000340074 COL6A3P12111 3177 aa16.88■□□□□ 0.29
UBE3B-201ENST00000340074 INO80B-WBP1J3KQ70 363 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms