RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 NCAPHQ15003 741 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 TRAF7Q6Q0C0 670 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 LRRC37BQ96QE4 947 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 HEY1Q9Y5J3 304 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 MYBL1P10243 752 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 ARFIP2P53365 341 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 ZNF394Q53GI3 561 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 ZNF746Q6NUN9 644 aaPredicted RBP8.42□□□□□ -1.06
CIITA-201ENST00000324288 APOA5Q6Q788 366 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 PI16Q6UXB8 463 aa8.42□□□□□ -1.06
CIITA-201ENST00000324288 RBM46Q8TBY0 533 aaKnown RBP8.42□□□□□ -1.06
CIITA-201ENST00000324288 MAPKBP1O60336 1514 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 WDR47O94967 919 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 ANP32DO95626 131 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 BPIFB4P59827 614 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PPP2R5BQ15173 497 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 AOC3Q16853 763 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 CACNA1FO60840 1977 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 USP17L3A6NCW0 530 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 USP17L4A6NCW7 530 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 SERPINB4P48594 390 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 FSCBQ5H9T9 825 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 USP17L1Q7RTZ2 530 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 OR9Q1Q8NGQ5 310 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 TBCKQ8TEA7 893 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PRR23D1E9PI22 279 aaPredicted RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 SNX2O60749 519 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PRR23D2P0DMB1 279 aaPredicted RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 RARS2Q5T160 578 aaKnown RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 LVRNQ6Q4G3 990 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 RIN3Q8TB24 985 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 RASA4BC9J798 803 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 IGF2BP3O00425 579 aaKnown RBP eCLIP8.41□□□□□ -1.06
CIITA-201ENST00000324288 RASA4O43374 803 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 CHEK2O96017 543 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 HNRNPH1P31943 449 aaKnown RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 USP17L2Q6R6M4 530 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 TEX2Q8IWB9 1127 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PCDHA4Q9UN74 947 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 MORC2Q9Y6X9 1032 aaPredicted RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 A2MP01023 1474 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 ATP8B3O60423 1300 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PYGLP06737 847 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 KPNA2P52292 529 aaKnown RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 ZNF274Q96GC6 653 aaPredicted RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 NUP85Q9BW27 656 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 TRABDQ9H4I3 376 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 SYNDIG1Q9H7V2 258 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 ZSCAN20P17040 1043 aaPredicted RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 AARSP49588 968 aaKnown RBP eCLIP8.41□□□□□ -1.06
CIITA-201ENST00000324288 AP1B1Q10567 949 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 SLC44A4Q53GD3 710 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 DDX42Q86XP3 938 aaKnown RBP eCLIP8.41□□□□□ -1.06
CIITA-201ENST00000324288 ABCC12Q96J65 1359 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 MYH13Q9UKX3 1938 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 CUL1Q13616 776 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 NBPF9Q3BBW0 867 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PRKAG2Q9UGJ0 569 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 LAMC3Q9Y6N6 1575 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 PLEKHG3A1L390 1219 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 DCTN3O75935 186 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 IL10P22301 178 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 MXI1P50539 228 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 DCAF4L1Q3SXM0 396 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 CDR2LQ86X02 465 aaPredicted RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 OR6B3Q8NGW1 331 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 NAF1Q96HR8 494 aaKnown RBP8.41□□□□□ -1.06
CIITA-201ENST00000324288 FSD1LQ9BXM9 530 aa8.41□□□□□ -1.06
CIITA-201ENST00000324288 CTCFP49711 727 aaPredicted RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 CACNB2Q08289 660 aaPredicted RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 WDR75Q8IWA0 830 aaKnown RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 MB21D1Q8N884 522 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 RNF25Q96BH1 459 aaPredicted RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 ZNF804BA4D1E1 1349 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 UBE4BO95155 1302 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 UHRF1BP1Q6BDS2 1440 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 CTIFO43310 598 aaKnown RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 TTLL1O95922 423 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 GNAT1P11488 350 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 POU5F1BQ06416 359 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 WASHC5Q12768 1159 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 TMC4Q7Z404 712 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 IL1RL2Q9HB29 575 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 NPHS2Q9NP85 383 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 TMEM247A6NEH6 219 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 CHL1O00533 1208 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 EIF2AK2P19525 551 aaKnown RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 PROSER3Q2NL68 480 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 KIRREL3Q8IZU9 778 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 TMCO5AQ8N6Q1 288 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 AFG1LQ8WV93 481 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 OPTNQ96CV9 577 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 AMNQ9BXJ7 453 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 HEATR1Q9H583 2144 aaKnown RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 NEMP1O14524 444 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 MED7O43513 233 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 CCDC142Q17RM4 750 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 RNF219Q5W0B1 726 aaPredicted RBP8.4□□□□□ -1.06
CIITA-201ENST00000324288 ARMCX6Q7L4S7 300 aa8.4□□□□□ -1.06
CIITA-201ENST00000324288 SCN4BQ8IWT1 228 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms