RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 DR1Q01658 176 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TFCP2Q12800 502 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 NAB1Q13506 487 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TAF12Q16514 161 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CCDC184Q52MB2 194 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SESTD1Q86VW0 696 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 C8orf58Q8NAV2 365 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PPP1R13BQ96KQ4 1090 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ZMYND12Q9H0C1 365 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 BHMT2Q9H2M3 363 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 BARHL2Q9NY43 387 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PSTPIP1O43586 416 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 KRT20P35900 424 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 AFMP43652 599 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 VSTM4Q8IW00 320 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TUBA8Q9NY65 449 aaPredicted RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 ZNF839A8K0R7 811 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PSAPP07602 524 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SKIV2L2P42285 1042 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 RPS6KA3P51812 740 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 GEMIN4P57678 1058 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 ITGA9Q13797 1035 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SNX17Q15036 470 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 RASGRP2Q7LDG7 609 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SERPINB12Q96P63 405 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 FERMT3Q86UX7 667 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 MROH7-TTC4A0A0A0MT08 1334 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ERI2A8K979 691 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 FGAP02671 866 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PHKG2P15735 406 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ADD2P35612 726 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 RWDD2BP57060 319 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 POU5F1Q01860 360 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 PKN2Q16513 984 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 LONRF2Q1L5Z9 754 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 LRRC8EQ6NSJ5 796 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SYT10Q6XYQ8 523 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 NPM3O75607 178 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 CCND1P24385 295 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 STAT3P40763 770 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CSTF3Q12996 717 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 SGSM1Q2NKQ1 1148 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TAF1BQ53T94 588 aaPredicted RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 FBXO38Q6PIJ6 1188 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TRPC4APQ8TEL6 797 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ACCSQ96QU6 501 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CYTH2Q99418 400 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 KIF13BQ9NQT8 1826 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PTGS1P23219 599 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PAPOLAP51003 745 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 NCKAP1LP55160 1127 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PTGDRQ13258 359 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 NCAPG2Q86XI2 1143 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PSPC1Q8WXF1 523 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 ASPSCR1Q9BZE9 553 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 LGALS16A8MUM7 142 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PSMD14O00487 310 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SASH1O94885 1247 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 LIG4P49917 911 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ARL4CP56559 192 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 NIM1KQ8IY84 436 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 MAGED4Q96JG8 741 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.28□□□□□ -1.72
USH2A-201ENST00000307340 NDST4Q9H3R1 872 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ABHD10Q9NUJ1 306 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 PDP2Q9P2J9 529 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CEMIPQ8WUJ3 1361 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ATP6V1E1P36543 226 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 MAP3K7CLP57077 242 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CABP7Q86V35 215 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 DAGLBQ8NCG7 672 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 DDI1Q8WTU0 396 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 MAGEE1Q9HCI5 957 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TRMT1Q9NXH9 659 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 ITM2BQ9Y287 266 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 UBR2Q8IWV8 1755 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TRMT44Q8IYL2 757 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 WDR70Q9NW82 654 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ZNF229Q9UJW7 825 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ACAD11Q709F0 780 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 LZTFL1Q9NQ48 299 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 APOBEC3FQ8IUX4 373 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 RFFLQ8WZ73 363 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 SPDL1Q96EA4 605 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 CNOT7Q9UIV1 285 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 ERCC6L2Q5T890 1561 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TNFRSF8P28908 595 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 KIF22Q14807 665 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 EZH2Q15910 746 aaKnown RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 SBK1Q52WX2 424 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 DCAF17Q5H9S7 520 aaPredicted RBP4.28□□□□□ -1.72
USH2A-201ENST00000307340 LRRC49Q8IUZ0 686 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 MRIQ9BWK5 157 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 GMNCA6NCL1 334 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 ZBTB5O15062 677 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 RHOBTB3O94955 611 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 TMEM191BP0C7N4 346 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 BNC1Q01954 994 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 FLOT2Q14254 428 aa4.28□□□□□ -1.72
USH2A-201ENST00000307340 LETM2Q2VYF4 491 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms