RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 H2AFVQ71UI9 128 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 DEFB128Q7Z7B8 93 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 ANKS1AQ92625 1134 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 RANBP17Q9H2T7 1088 aaKnown RBP10.01□□□□□ -0.81
PTPRE-202ENST00000306042 CYP26B1Q9NR63 512 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 DPP7Q9UHL4 492 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 CABYRO75952 493 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 ATP2A2P16615 1042 aaKnown RBP10.01□□□□□ -0.81
PTPRE-202ENST00000306042 KLRC1P26715 233 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 ZNF394Q53GI3 561 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 C1orf228Q6PIY5 440 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 TMCO3Q6UWJ1 677 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 RASGRP2Q7LDG7 609 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 TRIM11Q96F44 468 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 CCDC77Q9BR77 488 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 SLC38A7Q9NVC3 462 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 ARHGAP6O43182 974 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 ARL1P40616 181 aaPredicted RBP10.01□□□□□ -0.81
PTPRE-202ENST00000306042 CCDC91Q7Z6B0 441 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 MICALL1Q8N3F8 863 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 CD99L2Q8TCZ2 262 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 GPT2Q8TD30 523 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 IFT122Q9HBG6 1241 aa10.01□□□□□ -0.81
PTPRE-202ENST00000306042 FAM217BQ9NTX9 383 aaPredicted RBP10.01□□□□□ -0.81
PTPRE-202ENST00000306042 PPFIA4O75335 1185 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 FDPSP14324 419 aaKnown RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 GRK4P32298 578 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 ALDH7A1P49419 539 aaKnown RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 KIF11P52732 1056 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 AP3M2P53677 418 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 ATF7IP2Q5U623 682 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 GADD45GIP1Q8TAE8 222 aaPredicted RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 YME1L1Q96TA2 773 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 NDST4Q9H3R1 872 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 RAB20Q9NX57 234 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 BCCIPQ9P287 314 aaKnown RBP eCLIP10□□□□□ -0.81
PTPRE-202ENST00000306042 SYNGAP1Q96PV0 1343 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 CLCN3P51790 818 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 VAMP7P51809 220 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 TTC39CQ8N584 583 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 ENOX1Q8TC92 643 aaKnown RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 POLR3CQ9BUI4 534 aaPredicted RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 TMEM60Q9H2L4 133 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 MYO1FO00160 1098 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 IKBKBO14920 756 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 HOXA2O43364 376 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 OR1G1P47890 313 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 FXR2P51116 673 aaKnown RBP eCLIP10□□□□□ -0.81
PTPRE-202ENST00000306042 GOLGA8FQ08AF8 430 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 GOLGA8DPQ0D2H9 430 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 PKN2Q16513 984 aaKnown RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 MAP7D3Q8IWC1 876 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 TMEM169Q96HH4 297 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 CEP63Q96MT8 703 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 REEP2Q9BRK0 252 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 FBXO2Q9UK22 296 aaPredicted RBP10□□□□□ -0.81
PTPRE-202ENST00000306042 ALS2Q96Q42 1657 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 LRRC37A3O60309 1634 aa10□□□□□ -0.81
PTPRE-202ENST00000306042 DDX55Q8NHQ9 600 aaKnown RBP eCLIP9.99□□□□□ -0.81
PTPRE-202ENST00000306042 GABPB2Q8TAK5 448 aaPredicted RBP9.99□□□□□ -0.81
PTPRE-202ENST00000306042 SETD4Q9NVD3 440 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 PAXBP1Q9Y5B6 917 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 NHSL1Q5SYE7 1610 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 NPHP3-ACAD11A0A0J9YXS1 232 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 SLC37A4O43826 429 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 TMEM132BQ14DG7 1078 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 KIZQ2M2Z5 673 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 NME8Q8N427 588 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 GUF1Q8N442 669 aaKnown RBP9.99□□□□□ -0.81
PTPRE-202ENST00000306042 KIAA1524Q8TCG1 905 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CYP39A1Q9NYL5 469 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CPSF3Q9UKF6 684 aaKnown RBP9.99□□□□□ -0.81
PTPRE-202ENST00000306042 AMFRQ9UKV5 643 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 IGSF9BQ9UPX0 1349 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 A8MXQ7 604 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 HMGCRP04035 888 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 MFSD10Q14728 455 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 E2F5Q15329 346 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 RPS6KA1Q15418 735 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 DAAM2Q86T65 1068 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 BBS5Q8N3I7 341 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 DEFB118Q96PH6 123 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 KIF9Q9HAQ2 790 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 AGO4Q9HCK5 861 aaKnown RBP9.99□□□□□ -0.81
PTPRE-202ENST00000306042 GFPT2O94808 682 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CTDNEP1O95476 244 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 XPAP23025 273 aaPredicted RBP9.99□□□□□ -0.81
PTPRE-202ENST00000306042 BEX3Q00994 111 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 ITKQ08881 620 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 MAATS1Q7Z4T9 603 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CATSPER3Q86XQ3 398 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CEP112Q8N8E3 955 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CCDC26Q8TAB7 109 aa9.99□□□□□ -0.81
PTPRE-202ENST00000306042 CEP104O60308 925 aa9.98□□□□□ -0.81
PTPRE-202ENST00000306042 XRCC6P12956 609 aaKnown RBP eCLIP9.98□□□□□ -0.81
PTPRE-202ENST00000306042 CYP11B2P19099 503 aa9.98□□□□□ -0.81
PTPRE-202ENST00000306042 CYP27A1Q02318 531 aa9.98□□□□□ -0.81
PTPRE-202ENST00000306042 TMEM132DQ14C87 1099 aa9.98□□□□□ -0.81
PTPRE-202ENST00000306042 PRAMEF19Q5SWL8 479 aa9.98□□□□□ -0.81
PTPRE-202ENST00000306042 KRT39Q6A163 491 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms