RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W ARH1P48360 493 aa8.6□□□□□ -1.03
CAF40YNL288W NOP7P53261 605 aaKnown RBP8.6□□□□□ -1.03
CAF40YNL288W MPC54Q08550 464 aa8.6□□□□□ -1.03
CAF40YNL288W RTC1Q08281 1341 aa8.58□□□□□ -1.04
CAF40YNL288W COX6P00427 148 aa8.58□□□□□ -1.04
CAF40YNL288W PBS2P08018 668 aa8.58□□□□□ -1.04
CAF40YNL288W YDR344CQ05510 147 aa8.58□□□□□ -1.04
CAF40YNL288W DPL1Q05567 589 aa8.58□□□□□ -1.04
CAF40YNL288W RPP1BP10622 106 aaKnown RBP8.57□□□□□ -1.04
CAF40YNL288W YMR196WQ04336 1088 aa8.57□□□□□ -1.04
CAF40YNL288W BCK1Q01389 1478 aa8.56□□□□□ -1.04
CAF40YNL288W SPB4P25808 606 aaPredicted RBP8.55□□□□□ -1.04
CAF40YNL288W NMA111P53920 997 aa8.55□□□□□ -1.04
CAF40YNL288W HAP5Q02516 242 aa8.55□□□□□ -1.04
CAF40YNL288W CDC73Q06697 393 aa8.55□□□□□ -1.04
CAF40YNL288W NUP192P47054 1683 aa8.53□□□□□ -1.04
CAF40YNL288W CFT1Q06632 1357 aaKnown RBP8.53□□□□□ -1.04
CAF40YNL288W KRE5P22023 1365 aa8.51□□□□□ -1.05
CAF40YNL288W SPT23P35210 1082 aa8.51□□□□□ -1.05
CAF40YNL288W MRX12P47084 519 aa8.51□□□□□ -1.05
CAF40YNL288W ISU2Q12056 156 aa8.51□□□□□ -1.05
CAF40YNL288W THI12P42883 340 aa8.5□□□□□ -1.05
CAF40YNL288W THI5P43534 340 aa8.5□□□□□ -1.05
CAF40YNL288W THI11P47183 340 aa8.5□□□□□ -1.05
CAF40YNL288W THI13Q07748 340 aa8.5□□□□□ -1.05
CAF40YNL288W DSF2P38213 736 aa8.49□□□□□ -1.05
CAF40YNL288W MAM3Q12296 706 aa8.49□□□□□ -1.05
CAF40YNL288W ALD4P46367 519 aaKnown RBP8.47□□□□□ -1.05
CAF40YNL288W BNI4P53858 892 aa8.47□□□□□ -1.05
CAF40YNL288W RIA1P53893 1110 aa8.47□□□□□ -1.05
CAF40YNL288W RAD9P14737 1309 aa8.47□□□□□ -1.05
CAF40YNL288W ESL2P36168 1195 aa8.45□□□□□ -1.06
CAF40YNL288W PTC2P39966 464 aaKnown RBP8.45□□□□□ -1.06
CAF40YNL288W PEX21P50091 288 aa8.45□□□□□ -1.06
CAF40YNL288W BCK2P33306 851 aa8.44□□□□□ -1.06
CAF40YNL288W ORC6P38826 435 aa8.44□□□□□ -1.06
CAF40YNL288W CAB1Q04430 367 aa8.44□□□□□ -1.06
CAF40YNL288W CSC1Q06538 782 aa8.44□□□□□ -1.06
CAF40YNL288W NAP1P25293 417 aaKnown RBP8.43□□□□□ -1.06
CAF40YNL288W YNR029CP53729 429 aaKnown RBP8.43□□□□□ -1.06
CAF40YNL288W IES2P40154 320 aa8.42□□□□□ -1.06
CAF40YNL288W GAP1P19145 602 aaPredicted RBP8.4□□□□□ -1.06
CAF40YNL288W VRP1P37370 817 aa8.4□□□□□ -1.06
CAF40YNL288W TAF5P38129 798 aa8.4□□□□□ -1.06
CAF40YNL288W TFB4Q12004 338 aa8.4□□□□□ -1.06
CAF40YNL288W TY3B-IQ7LHG5 1498 aaKnown RBP8.39□□□□□ -1.07
CAF40YNL288W YML082WQ04533 649 aaKnown RBP8.39□□□□□ -1.07
CAF40YNL288W TAF8Q03750 510 aa8.37□□□□□ -1.07
CAF40YNL288W TUM1Q08686 304 aaKnown RBP8.37□□□□□ -1.07
CAF40YNL288W YRR1Q12172 810 aa8.37□□□□□ -1.07
CAF40YNL288W MVP1P40959 511 aaKnown RBP8.36□□□□□ -1.07
CAF40YNL288W PDR1P12383 1068 aa8.35□□□□□ -1.07
CAF40YNL288W RGR1P19263 1082 aa8.34□□□□□ -1.07
CAF40YNL288W PSE1P32337 1089 aaKnown RBP8.34□□□□□ -1.07
CAF40YNL288W NUP42P49686 430 aaKnown RBP8.34□□□□□ -1.07
CAF40YNL288W SCT1P32784 759 aa8.33□□□□□ -1.08
CAF40YNL288W YLR419WQ06698 1435 aaKnown RBP8.32□□□□□ -1.08
CAF40YNL288W SPE2P21182 396 aa8.31□□□□□ -1.08
CAF40YNL288W DIT2P21595 489 aa8.31□□□□□ -1.08
CAF40YNL288W RAM1P22007 431 aa8.31□□□□□ -1.08
CAF40YNL288W KIP3P53086 805 aaKnown RBP8.31□□□□□ -1.08
CAF40YNL288W YPR109WQ06104 294 aa8.31□□□□□ -1.08
CAF40YNL288W CPS1P27614 576 aa8.29□□□□□ -1.08
CAF40YNL288W XDJ1P39102 459 aa8.29□□□□□ -1.08
CAF40YNL288W PSK1P31374 1356 aa8.28□□□□□ -1.08
CAF40YNL288W RCM1P53972 490 aa8.28□□□□□ -1.08
CAF40YNL288W YPR015CQ12531 247 aa8.28□□□□□ -1.08
CAF40YNL288W NUD1P32336 851 aa8.26□□□□□ -1.09
CAF40YNL288W NPL4P33755 580 aa8.26□□□□□ -1.09
CAF40YNL288W CLB5P30283 435 aa8.25□□□□□ -1.09
CAF40YNL288W PPH3P32345 308 aa8.24□□□□□ -1.09
CAF40YNL288W GYP1Q08484 637 aa8.24□□□□□ -1.09
CAF40YNL288W YNR021WP53723 404 aaKnown RBP8.23□□□□□ -1.09
CAF40YNL288W ADE6P38972 1358 aaKnown RBP8.22□□□□□ -1.09
CAF40YNL288W POL5P39985 1022 aaKnown RBP8.22□□□□□ -1.09
CAF40YNL288W TEA1P47988 759 aa8.22□□□□□ -1.09
CAF40YNL288W RRP5Q05022 1729 aaKnown RBP8.21□□□□□ -1.09
CAF40YNL288W LEU3P08638 886 aa8.21□□□□□ -1.1
CAF40YNL288W STR2P47164 639 aa8.21□□□□□ -1.1
CAF40YNL288W ISM1P48526 1002 aa8.21□□□□□ -1.1
CAF40YNL288W ATF2P53296 535 aa8.21□□□□□ -1.1
CAF40YNL288W ORC1P54784 914 aaPredicted RBP8.21□□□□□ -1.1
CAF40YNL288W CHZ1P40019 153 aaPredicted RBP8.2□□□□□ -1.1
CAF40YNL288W BUD20Q08004 166 aaPredicted RBP8.2□□□□□ -1.1
CAF40YNL288W TY4B-HP0C2J7 1802 aa8.19□□□□□ -1.1
CAF40YNL288W TY4B-JP47024 1803 aa8.19□□□□□ -1.1
CAF40YNL288W MHP1P43638 1398 aa8.19□□□□□ -1.1
CAF40YNL288W YRF1-2P40105 1681 aa8.18□□□□□ -1.1
CAF40YNL288W GLC3P32775 704 aa8.18□□□□□ -1.1
CAF40YNL288W MTR4P47047 1073 aaKnown RBP8.18□□□□□ -1.1
CAF40YNL288W APP1P53933 587 aa8.18□□□□□ -1.1
CAF40YNL288W SAS4Q04003 481 aa8.18□□□□□ -1.1
CAF40YNL288W PRT1P06103 763 aaKnown RBP8.17□□□□□ -1.1
CAF40YNL288W GCD11P32481 527 aaKnown RBP8.17□□□□□ -1.1
CAF40YNL288W LEU2P04173 364 aaPredicted RBP8.16□□□□□ -1.1
CAF40YNL288W YML133CQ03099 1374 aa8.16□□□□□ -1.1
CAF40YNL288W YLL067CQ07888 1374 aa8.16□□□□□ -1.1
CAF40YNL288W YLL066CQ99208 1374 aa8.16□□□□□ -1.1
CAF40YNL288W PRP45P28004 379 aaPredicted RBP8.15□□□□□ -1.1
CAF40YNL288W ENT1Q12518 454 aa8.15□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms