RNA–Protein interactions for RNA: YLR058C

SHM2, Transcript of Cytosolic serine hydroxymethyltransferase, yeastyeast

Gene SHM2, Length 1,410 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHM2YLR058C YKR075CP36155 307 aa13.28□□□□□ -0.28
SHM2YLR058C SAP155P43612 1002 aa13.28□□□□□ -0.28
SHM2YLR058C OSM1P21375 501 aaKnown RBP13.27□□□□□ -0.29
SHM2YLR058C ATG13Q06628 738 aa13.27□□□□□ -0.29
SHM2YLR058C RTT109Q07794 436 aa13.27□□□□□ -0.29
SHM2YLR058C CDC45Q08032 650 aa13.27□□□□□ -0.29
SHM2YLR058C TPD3P31383 635 aa13.26□□□□□ -0.29
SHM2YLR058C HEF3P53978 1044 aaKnown RBP13.26□□□□□ -0.29
SHM2YLR058C LAM6Q08001 693 aa13.24□□□□□ -0.29
SHM2YLR058C BUD31P25337 157 aaPredicted RBP13.22□□□□□ -0.29
SHM2YLR058C KCC4P25389 1037 aa13.22□□□□□ -0.29
SHM2YLR058C RVB2Q12464 471 aaKnown RBP13.22□□□□□ -0.29
SHM2YLR058C ZDS1P50111 915 aaKnown RBP13.22□□□□□ -0.29
SHM2YLR058C NPR2P39923 615 aa13.21□□□□□ -0.3
SHM2YLR058C YJL181WP46987 611 aa13.21□□□□□ -0.3
SHM2YLR058C EDE1P34216 1381 aa13.2□□□□□ -0.3
SHM2YLR058C PRP40P33203 583 aaKnown RBP13.2□□□□□ -0.3
SHM2YLR058C MAM1P40065 302 aa13.2□□□□□ -0.3
SHM2YLR058C UGA3P26370 528 aa13.19□□□□□ -0.3
SHM2YLR058C RRT14P40470 206 aa13.19□□□□□ -0.3
SHM2YLR058C YBP2P53169 641 aa13.19□□□□□ -0.3
SHM2YLR058C UBP1P25037 809 aa13.18□□□□□ -0.3
SHM2YLR058C GYP7P48365 746 aa13.18□□□□□ -0.3
SHM2YLR058C NSE3Q05541 303 aa13.17□□□□□ -0.3
SHM2YLR058C RIM15P43565 1770 aa13.16□□□□□ -0.3
SHM2YLR058C ALE1Q08548 619 aa13.16□□□□□ -0.3
SHM2YLR058C BMS1Q08965 1183 aaKnown RBP13.15□□□□□ -0.3
SHM2YLR058C YRB30P53107 440 aaPredicted RBP13.14□□□□□ -0.31
SHM2YLR058C COQ4O13525 335 aa13.13□□□□□ -0.31
SHM2YLR058C GRX1P25373 110 aaKnown RBP13.13□□□□□ -0.31
SHM2YLR058C YBR287WP38355 427 aa13.13□□□□□ -0.31
SHM2YLR058C TUM1Q08686 304 aaKnown RBP13.13□□□□□ -0.31
SHM2YLR058C LYS2P07702 1392 aa13.12□□□□□ -0.31
SHM2YLR058C RMT2Q03305 412 aa13.12□□□□□ -0.31
SHM2YLR058C LYS4P49367 693 aaPredicted RBP13.11□□□□□ -0.31
SHM2YLR058C NAB6Q03735 1134 aaKnown RBP RIP-Chip data13.11□□□□□ -0.31not detected
SHM2YLR058C SRT1Q03175 343 aa13.1□□□□□ -0.31
SHM2YLR058C MSB4Q12317 492 aa13.1□□□□□ -0.31
SHM2YLR058C FUN12P39730 1002 aaKnown RBP13.08□□□□□ -0.32
SHM2YLR058C PRI1P10363 409 aa13.07□□□□□ -0.32
SHM2YLR058C RAD4P14736 754 aa13.07□□□□□ -0.32
SHM2YLR058C NOP53Q12080 455 aaKnown RBP13.07□□□□□ -0.32
SHM2YLR058C YOL057WQ08225 711 aa13.05□□□□□ -0.32
SHM2YLR058C GRE2Q12068 342 aaKnown RBP13.05□□□□□ -0.32
SHM2YLR058C MAK21Q12176 1025 aaKnown RBP13.05□□□□□ -0.32
SHM2YLR058C YFR016CP43597 1233 aaKnown RBP13.04□□□□□ -0.32
SHM2YLR058C ZDS2P54786 942 aa13.04□□□□□ -0.32
SHM2YLR058C YIL092WP40497 633 aa13.03□□□□□ -0.32
SHM2YLR058C CTH1P47976 325 aa13.03□□□□□ -0.32
SHM2YLR058C SSP2Q08646 371 aa13.02□□□□□ -0.33
SHM2YLR058C DAL5P15365 543 aa13.01□□□□□ -0.33
SHM2YLR058C YBL086CP38177 466 aa13.01□□□□□ -0.33
SHM2YLR058C PHM7Q12252 991 aa13.01□□□□□ -0.33
SHM2YLR058C MDG1P53885 366 aa13□□□□□ -0.33
SHM2YLR058C RAD2P07276 1031 aa12.99□□□□□ -0.33
SHM2YLR058C BUD27P43573 796 aaKnown RBP RIP-Chip data12.99□□□□□ -0.33not detected
SHM2YLR058C ALD2P47771 506 aa12.99□□□□□ -0.33
SHM2YLR058C TEA1P47988 759 aa12.99□□□□□ -0.33
SHM2YLR058C BDF1P35817 686 aa12.98□□□□□ -0.33
SHM2YLR058C GTT3P39996 337 aa12.98□□□□□ -0.33
SHM2YLR058C YDR306CQ06640 478 aa12.98□□□□□ -0.33
SHM2YLR058C BUG1Q12191 341 aa12.98□□□□□ -0.33
SHM2YLR058C NYV1Q12255 253 aa12.97□□□□□ -0.33
SHM2YLR058C SSA2P10592 639 aaKnown RBP12.96□□□□□ -0.33
SHM2YLR058C ARG8P18544 423 aa12.96□□□□□ -0.33
SHM2YLR058C APL2P36000 726 aaPredicted RBP12.96□□□□□ -0.33
SHM2YLR058C VPS64Q03944 604 aa12.96□□□□□ -0.33
SHM2YLR058C YPR204WQ08995 1032 aa12.96□□□□□ -0.33
SHM2YLR058C MRP7P12687 371 aa12.96□□□□□ -0.34
SHM2YLR058C DNM1P54861 757 aa12.96□□□□□ -0.34
SHM2YLR058C RPG1P38249 964 aaKnown RBP12.95□□□□□ -0.34
SHM2YLR058C YPP1P46951 817 aa12.95□□□□□ -0.34
SHM2YLR058C YGR122WP53272 402 aa12.95□□□□□ -0.34
SHM2YLR058C SER1P33330 395 aaKnown RBP12.94□□□□□ -0.34
SHM2YLR058C UGA2P38067 497 aa12.94□□□□□ -0.34
SHM2YLR058C YGL082WP53155 381 aa12.94□□□□□ -0.34
SHM2YLR058C UTP22P53254 1237 aaPredicted RBP12.94□□□□□ -0.34
SHM2YLR058C SWI1P09547 1314 aa12.93□□□□□ -0.34
SHM2YLR058C DCD1P06773 312 aa12.93□□□□□ -0.34
SHM2YLR058C CST6P40535 587 aa12.93□□□□□ -0.34
SHM2YLR058C CSI1Q04368 295 aa12.93□□□□□ -0.34
SHM2YLR058C RAD24P32641 659 aa12.92□□□□□ -0.34
SHM2YLR058C NUP133P36161 1157 aa12.91□□□□□ -0.34
SHM2YLR058C UTP10P42945 1769 aaKnown RBP12.91□□□□□ -0.34
SHM2YLR058C TRP5P00931 707 aaKnown RBP12.9□□□□□ -0.34
SHM2YLR058C YJR008WP47085 338 aa12.9□□□□□ -0.34
SHM2YLR058C ALD3P54114 506 aa12.9□□□□□ -0.34
SHM2YLR058C NOP8Q08287 484 aaPredicted RBP12.9□□□□□ -0.34
SHM2YLR058C RPS19AP07280 144 aaKnown RBP12.88□□□□□ -0.35
SHM2YLR058C RPS19BP07281 144 aaPredicted RBP12.88□□□□□ -0.35
SHM2YLR058C SWC3P31376 625 aa12.88□□□□□ -0.35
SHM2YLR058C POL32P47110 350 aa12.88□□□□□ -0.35
SHM2YLR058C YLR271WQ06152 274 aa12.88□□□□□ -0.35
SHM2YLR058C TOS1P38288 455 aa12.88□□□□□ -0.35
SHM2YLR058C PUF6Q04373 656 aaKnown RBP12.86□□□□□ -0.35
SHM2YLR058C LPD1P09624 499 aaKnown RBP12.85□□□□□ -0.35
SHM2YLR058C TFA1P36100 482 aa12.85□□□□□ -0.35
SHM2YLR058C BOI2P39969 1040 aa12.85□□□□□ -0.35
SHM2YLR058C PKH1Q03407 766 aa12.85□□□□□ -0.35
SHM2YLR058C RIX7Q07844 837 aaKnown RBP12.85□□□□□ -0.35
Retrieved 100 of 5,963 RNA–protein pairs in 8.4 ms