RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C DUR1,2P32528 1835 aaKnown RBP2.91□□□□□ -1.94
UFD4YKL010C YRF1-3P0CX14 1859 aa2.9□□□□□ -1.94
UFD4YKL010C YRF1-7P0CX15 1859 aa2.9□□□□□ -1.94
UFD4YKL010C YRF1-6P53819 1859 aa2.9□□□□□ -1.94
UFD4YKL010C COQ8P27697 501 aa2.9□□□□□ -1.95
UFD4YKL010C ADE6P38972 1358 aaKnown RBP2.9□□□□□ -1.95
UFD4YKL010C SOL3P38858 249 aa2.89□□□□□ -1.95
UFD4YKL010C IPL1P38991 367 aa2.89□□□□□ -1.95
UFD4YKL010C NOP7P53261 605 aaKnown RBP2.89□□□□□ -1.95
UFD4YKL010C BCK2P33306 851 aa2.89□□□□□ -1.95
UFD4YKL010C CKB1P43639 278 aa2.89□□□□□ -1.95
UFD4YKL010C YIR014WP40570 242 aa2.89□□□□□ -1.95
UFD4YKL010C ATH1P48016 1211 aa2.89□□□□□ -1.95
UFD4YKL010C AI4P03878 556 aa2.88□□□□□ -1.95
UFD4YKL010C MPH3P0CE00 602 aa2.88□□□□□ -1.95
UFD4YKL010C MIF2P35201 549 aa2.88□□□□□ -1.95
UFD4YKL010C PAF1P38351 445 aa2.88□□□□□ -1.95
UFD4YKL010C YAP3P38749 330 aa2.88□□□□□ -1.95
UFD4YKL010C YRB30P53107 440 aaPredicted RBP2.88□□□□□ -1.95
UFD4YKL010C PRP43P53131 767 aaKnown RBP2.88□□□□□ -1.95
UFD4YKL010C RIM15P43565 1770 aa2.88□□□□□ -1.95
UFD4YKL010C AUS1Q08409 1394 aa2.87□□□□□ -1.95
UFD4YKL010C ARH1P48360 493 aa2.87□□□□□ -1.95
UFD4YKL010C ALD4P46367 519 aaKnown RBP2.87□□□□□ -1.95
UFD4YKL010C PML39Q03760 334 aa2.86□□□□□ -1.95
UFD4YKL010C RAD9P14737 1309 aa2.86□□□□□ -1.95
UFD4YKL010C YEF3P16521 1044 aaKnown RBP2.86□□□□□ -1.95
UFD4YKL010C URN1Q06525 465 aaKnown RBP2.86□□□□□ -1.95
UFD4YKL010C ILV3P39522 585 aaKnown RBP2.85□□□□□ -1.95
UFD4YKL010C YDR344CQ05510 147 aa2.85□□□□□ -1.95
UFD4YKL010C KRE5P22023 1365 aa2.85□□□□□ -1.95
UFD4YKL010C PDS5Q04264 1277 aa2.85□□□□□ -1.95
UFD4YKL010C YGR273CP53329 174 aa2.85□□□□□ -1.95
UFD4YKL010C TAP42Q04372 366 aa2.85□□□□□ -1.95
UFD4YKL010C XDJ1P39102 459 aa2.84□□□□□ -1.95
UFD4YKL010C ITT1Q04638 464 aa2.84□□□□□ -1.95
UFD4YKL010C CDC45Q08032 650 aa2.84□□□□□ -1.96
UFD4YKL010C LYS2P07702 1392 aa2.84□□□□□ -1.96
UFD4YKL010C NAB6Q03735 1134 aaKnown RBP RIP-Chip data2.83□□□□□ -1.96not detected
UFD4YKL010C TYS1P36421 394 aaKnown RBP2.83□□□□□ -1.96
UFD4YKL010C VPS27P40343 622 aaKnown RBP2.83□□□□□ -1.96
UFD4YKL010C SPE2P21182 396 aa2.82□□□□□ -1.96
UFD4YKL010C MID1P41821 548 aa2.82□□□□□ -1.96
UFD4YKL010C RPO41P13433 1351 aaKnown RBP2.82□□□□□ -1.96
UFD4YKL010C SPT23P35210 1082 aa2.82□□□□□ -1.96
UFD4YKL010C BNI4P53858 892 aa2.82□□□□□ -1.96
UFD4YKL010C ELP4Q02884 456 aaKnown RBP2.82□□□□□ -1.96
UFD4YKL010C RRP46P53256 223 aaPredicted RBP2.82□□□□□ -1.96
UFD4YKL010C EDE1P34216 1381 aa2.82□□□□□ -1.96
UFD4YKL010C YFR016CP43597 1233 aaKnown RBP2.81□□□□□ -1.96
UFD4YKL010C VRP1P37370 817 aa2.81□□□□□ -1.96
UFD4YKL010C YML082WQ04533 649 aaKnown RBP2.81□□□□□ -1.96
UFD4YKL010C TAF5P38129 798 aa2.81□□□□□ -1.96
UFD4YKL010C HEF3P53978 1044 aaKnown RBP2.81□□□□□ -1.96
UFD4YKL010C HAP5Q02516 242 aa2.81□□□□□ -1.96
UFD4YKL010C FAS2P19097 1887 aaKnown RBP2.81□□□□□ -1.96
UFD4YKL010C KIP3P53086 805 aaKnown RBP2.81□□□□□ -1.96
UFD4YKL010C FIG2P25653 1609 aa2.81□□□□□ -1.96
UFD4YKL010C MPC54Q08550 464 aa2.8□□□□□ -1.96
UFD4YKL010C OPY1P38271 328 aa2.8□□□□□ -1.96
UFD4YKL010C TRK1P12685 1235 aa2.79□□□□□ -1.96
UFD4YKL010C CPS1P27614 576 aa2.79□□□□□ -1.96
UFD4YKL010C SLI15P38283 698 aa2.79□□□□□ -1.96
UFD4YKL010C SUI2P20459 304 aaKnown RBP2.79□□□□□ -1.96
UFD4YKL010C PEX29Q03370 554 aa2.79□□□□□ -1.96
UFD4YKL010C RVB2Q12464 471 aaKnown RBP2.78□□□□□ -1.96
UFD4YKL010C KEX1P09620 729 aa2.78□□□□□ -1.96
UFD4YKL010C GRX4P32642 244 aa2.78□□□□□ -1.96
UFD4YKL010C SET1P38827 1080 aaKnown RBP2.78□□□□□ -1.97
UFD4YKL010C TAF8Q03750 510 aa2.78□□□□□ -1.97
UFD4YKL010C DPL1Q05567 589 aa2.78□□□□□ -1.97
UFD4YKL010C IME2P32581 645 aa2.77□□□□□ -1.97
UFD4YKL010C BUD27P43573 796 aaKnown RBP RIP-Chip data2.77□□□□□ -1.97not detected
UFD4YKL010C MTR4P47047 1073 aaKnown RBP2.77□□□□□ -1.97
UFD4YKL010C NMA111P53920 997 aa2.77□□□□□ -1.97
UFD4YKL010C PPH3P32345 308 aa2.77□□□□□ -1.97
UFD4YKL010C UBP14P38237 781 aaKnown RBP2.77□□□□□ -1.97
UFD4YKL010C HKR1P41809 1802 aa2.76□□□□□ -1.97
UFD4YKL010C NUP145P49687 1317 aa2.76□□□□□ -1.97
UFD4YKL010C THI22Q06490 572 aa2.76□□□□□ -1.97
UFD4YKL010C RAM1P22007 431 aa2.76□□□□□ -1.97
UFD4YKL010C PRD1P25375 712 aa2.76□□□□□ -1.97
UFD4YKL010C PTC2P39966 464 aaKnown RBP2.76□□□□□ -1.97
UFD4YKL010C YNR029CP53729 429 aaKnown RBP2.76□□□□□ -1.97
UFD4YKL010C MAK10Q02197 733 aa2.76□□□□□ -1.97
UFD4YKL010C YLR326WQ06170 240 aaKnown RBP2.76□□□□□ -1.97
UFD4YKL010C ISU2Q12056 156 aa2.76□□□□□ -1.97
UFD4YKL010C ROM2P51862 1356 aaKnown RBP2.75□□□□□ -1.97
UFD4YKL010C YIL092WP40497 633 aa2.75□□□□□ -1.97
UFD4YKL010C YPR148CQ06523 435 aa2.75□□□□□ -1.97
UFD4YKL010C DPS1P04802 557 aaKnown RBP2.75□□□□□ -1.97
UFD4YKL010C NAP1P25293 417 aaKnown RBP2.75□□□□□ -1.97
UFD4YKL010C SAP155P43612 1002 aa2.75□□□□□ -1.97
UFD4YKL010C YJR008WP47085 338 aa2.75□□□□□ -1.97
UFD4YKL010C CHZ1P40019 153 aaPredicted RBP2.74□□□□□ -1.97
UFD4YKL010C CTF4Q01454 927 aa2.74□□□□□ -1.97
UFD4YKL010C CAB1Q04430 367 aa2.74□□□□□ -1.97
UFD4YKL010C LSP1Q12230 341 aaKnown RBP2.74□□□□□ -1.97
UFD4YKL010C HGH1P48362 394 aaKnown RBP2.74□□□□□ -1.97
UFD4YKL010C YPR015CQ12531 247 aa2.74□□□□□ -1.97
Retrieved 100 of 5,963 RNA–protein pairs in 61.3 ms