RNA–Protein interactions for RNA: YIL123W

SIM1, Transcript of Protein of the SUN family (Sim1p, Uth1p, Nca3p, Sun4p), yeastyeast

Gene SIM1, Length 1,431 nt, Biotype protein coding, Subcellular localisation Mitochondria .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIM1YIL123W YFR016CP43597 1233 aaKnown RBP13.98□□□□□ -0.17
SIM1YIL123W SRT1Q03175 343 aa13.94□□□□□ -0.18
SIM1YIL123W YAH1Q12184 172 aaKnown RBP13.94□□□□□ -0.18
SIM1YIL123W UGA3P26370 528 aa13.93□□□□□ -0.18
SIM1YIL123W INP54Q08227 384 aaKnown RBP13.93□□□□□ -0.18
SIM1YIL123W BMS1Q08965 1183 aaKnown RBP13.93□□□□□ -0.18
SIM1YIL123W POL32P47110 350 aa13.92□□□□□ -0.18
SIM1YIL123W ENV9Q08651 330 aa13.92□□□□□ -0.18
SIM1YIL123W NSE3Q05541 303 aa13.91□□□□□ -0.18
SIM1YIL123W NUP145P49687 1317 aa13.9□□□□□ -0.18
SIM1YIL123W KCC4P25389 1037 aa13.9□□□□□ -0.18
SIM1YIL123W IES2P40154 320 aa13.9□□□□□ -0.18
SIM1YIL123W COQ4O13525 335 aa13.9□□□□□ -0.19
SIM1YIL123W LYS2P07702 1392 aa13.89□□□□□ -0.19
SIM1YIL123W APP1P53933 587 aa13.89□□□□□ -0.19
SIM1YIL123W MEC3Q02574 474 aa13.89□□□□□ -0.19
SIM1YIL123W RPC31P17890 251 aa13.88□□□□□ -0.19
SIM1YIL123W YBR287WP38355 427 aa13.88□□□□□ -0.19
SIM1YIL123W PUF6Q04373 656 aaKnown RBP13.86□□□□□ -0.19
SIM1YIL123W YPP1P46951 817 aa13.85□□□□□ -0.19
SIM1YIL123W ADE16P54113 591 aaKnown RBP13.85□□□□□ -0.19
SIM1YIL123W TRP5P00931 707 aaKnown RBP13.84□□□□□ -0.19
SIM1YIL123W YKL133CP36066 463 aa13.83□□□□□ -0.2
SIM1YIL123W YOL057WQ08225 711 aa13.83□□□□□ -0.2
SIM1YIL123W YRF1-3P0CX14 1859 aa13.83□□□□□ -0.2
SIM1YIL123W YRF1-7P0CX15 1859 aa13.83□□□□□ -0.2
SIM1YIL123W YRF1-6P53819 1859 aa13.83□□□□□ -0.2
SIM1YIL123W OSM1P21375 501 aaKnown RBP13.82□□□□□ -0.2
SIM1YIL123W CSI1Q04368 295 aa13.81□□□□□ -0.2
SIM1YIL123W IMH1Q06704 911 aaKnown RBP13.81□□□□□ -0.2
SIM1YIL123W RPS19AP07280 144 aaKnown RBP13.8□□□□□ -0.2
SIM1YIL123W RPS19BP07281 144 aaPredicted RBP13.8□□□□□ -0.2
SIM1YIL123W ROM2P51862 1356 aaKnown RBP13.79□□□□□ -0.2
SIM1YIL123W RAD4P14736 754 aa13.79□□□□□ -0.2
SIM1YIL123W FRK1Q03002 865 aaPredicted RBP13.77□□□□□ -0.21
SIM1YIL123W ALE1Q08548 619 aa13.77□□□□□ -0.21
SIM1YIL123W ATG13Q06628 738 aa13.76□□□□□ -0.21
SIM1YIL123W YNG2P38806 282 aaKnown RBP13.75□□□□□ -0.21
SIM1YIL123W YDR306CQ06640 478 aa13.75□□□□□ -0.21
SIM1YIL123W MRP7P12687 371 aa13.73□□□□□ -0.21
SIM1YIL123W YBP2P53169 641 aa13.73□□□□□ -0.21
SIM1YIL123W ILV3P39522 585 aaKnown RBP13.73□□□□□ -0.21
SIM1YIL123W NOP8Q08287 484 aaPredicted RBP13.73□□□□□ -0.21
SIM1YIL123W RAD24P32641 659 aa13.72□□□□□ -0.21
SIM1YIL123W SPO1P53541 631 aa13.72□□□□□ -0.21
SIM1YIL123W RMT2Q03305 412 aa13.72□□□□□ -0.21
SIM1YIL123W DNM1P54861 757 aa13.71□□□□□ -0.22
SIM1YIL123W DOT5P40553 215 aa13.7□□□□□ -0.22
SIM1YIL123W YGR122WP53272 402 aa13.7□□□□□ -0.22
SIM1YIL123W ECM16Q04217 1267 aaKnown RBP13.7□□□□□ -0.22
SIM1YIL123W ZDS2P54786 942 aa13.69□□□□□ -0.22
SIM1YIL123W COBP00163 385 aa13.68□□□□□ -0.22
SIM1YIL123W CST6P40535 587 aa13.68□□□□□ -0.22
SIM1YIL123W YIR014WP40570 242 aa13.68□□□□□ -0.22
SIM1YIL123W FOX2Q02207 900 aaKnown RBP13.68□□□□□ -0.22
SIM1YIL123W BOI2P39969 1040 aa13.67□□□□□ -0.22
SIM1YIL123W YJR008WP47085 338 aa13.67□□□□□ -0.22
SIM1YIL123W GCD7P32502 381 aaPredicted RBP13.66□□□□□ -0.22
SIM1YIL123W NOP53Q12080 455 aaKnown RBP13.66□□□□□ -0.22
SIM1YIL123W HGH1P48362 394 aaKnown RBP13.65□□□□□ -0.22
SIM1YIL123W YKR075CP36155 307 aa13.64□□□□□ -0.23
SIM1YIL123W YIL055CP40523 627 aaKnown RBP13.64□□□□□ -0.23
SIM1YIL123W SSP2Q08646 371 aa13.64□□□□□ -0.23
SIM1YIL123W SWI1P09547 1314 aa13.64□□□□□ -0.23
SIM1YIL123W GRX1P25373 110 aaKnown RBP13.64□□□□□ -0.23
SIM1YIL123W SWC3P31376 625 aa13.64□□□□□ -0.23
SIM1YIL123W NUP133P36161 1157 aa13.64□□□□□ -0.23
SIM1YIL123W TUM1Q08686 304 aaKnown RBP13.64□□□□□ -0.23
SIM1YIL123W NMD2P38798 1089 aaKnown RBP13.63□□□□□ -0.23
SIM1YIL123W OPY1P38271 328 aa13.61□□□□□ -0.23
SIM1YIL123W MDG1P53885 366 aa13.6□□□□□ -0.23
SIM1YIL123W NKP2Q06162 153 aa13.6□□□□□ -0.23
SIM1YIL123W LAM6Q08001 693 aa13.59□□□□□ -0.23
SIM1YIL123W PHM7Q12252 991 aa13.59□□□□□ -0.23
SIM1YIL123W RFC1P38630 861 aaKnown RBP13.58□□□□□ -0.24
SIM1YIL123W VPS64Q03944 604 aa13.58□□□□□ -0.24
SIM1YIL123W YPR204WQ08995 1032 aa13.58□□□□□ -0.24
SIM1YIL123W RAD50P12753 1312 aa13.58□□□□□ -0.24
SIM1YIL123W SET1P38827 1080 aaKnown RBP13.57□□□□□ -0.24
SIM1YIL123W YLR271WQ06152 274 aa13.57□□□□□ -0.24
SIM1YIL123W UBP12P39538 1254 aa13.56□□□□□ -0.24
SIM1YIL123W LPD1P09624 499 aaKnown RBP13.56□□□□□ -0.24
SIM1YIL123W CDC16P09798 840 aa13.56□□□□□ -0.24
SIM1YIL123W APL2P36000 726 aaPredicted RBP13.56□□□□□ -0.24
SIM1YIL123W ARG8P18544 423 aa13.55□□□□□ -0.24
SIM1YIL123W IME2P32581 645 aa13.54□□□□□ -0.24
SIM1YIL123W PRP40P33203 583 aaKnown RBP13.53□□□□□ -0.24
SIM1YIL123W RIM15P43565 1770 aa13.52□□□□□ -0.24
SIM1YIL123W RPN11P43588 306 aaKnown RBP13.52□□□□□ -0.25
SIM1YIL123W MSB4Q12317 492 aa13.52□□□□□ -0.25
SIM1YIL123W DCD1P06773 312 aa13.51□□□□□ -0.25
SIM1YIL123W SSF1P38789 453 aaPredicted RBP13.51□□□□□ -0.25
SIM1YIL123W YJL181WP46987 611 aa13.49□□□□□ -0.25
SIM1YIL123W TEA1P47988 759 aa13.49□□□□□ -0.25
SIM1YIL123W NCB2Q92317 146 aa13.49□□□□□ -0.25
SIM1YIL123W BDP1P46678 594 aa13.48□□□□□ -0.25
SIM1YIL123W GCR2Q01722 534 aa13.48□□□□□ -0.25
SIM1YIL123W PKH1Q03407 766 aa13.48□□□□□ -0.25
SIM1YIL123W ITC1P53125 1264 aa13.47□□□□□ -0.25
SIM1YIL123W YMR074CQ04773 145 aa13.47□□□□□ -0.25
Retrieved 100 of 5,963 RNA–protein pairs in 64.1 ms