RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SPB4P25808 606 aaPredicted RBP7.44□□□□□ -1.22
UPF3YGR072W DMA1P38823 416 aa7.44□□□□□ -1.22
UPF3YGR072W UBP2Q01476 1272 aa7.43□□□□□ -1.22
UPF3YGR072W MMP1Q12372 583 aa7.43□□□□□ -1.22
UPF3YGR072W VAC17P25591 423 aa7.42□□□□□ -1.22
UPF3YGR072W YBL086CP38177 466 aa7.42□□□□□ -1.22
UPF3YGR072W DLD1P32891 587 aa7.41□□□□□ -1.22
UPF3YGR072W YJR098CP47139 656 aa7.41□□□□□ -1.22
UPF3YGR072W ITT1Q04638 464 aa7.41□□□□□ -1.22
UPF3YGR072W ESS1P22696 170 aa7.39□□□□□ -1.23
UPF3YGR072W TCB1Q12466 1186 aa7.39□□□□□ -1.23
UPF3YGR072W APP1P53933 587 aa7.38□□□□□ -1.23
UPF3YGR072W GLN1P32288 370 aaKnown RBP7.37□□□□□ -1.23
UPF3YGR072W ICP55P40051 511 aa7.37□□□□□ -1.23
UPF3YGR072W ROG3P43602 733 aa7.37□□□□□ -1.23
UPF3YGR072W YPR204WQ08995 1032 aa7.37□□□□□ -1.23
UPF3YGR072W YJU3P28321 313 aa7.36□□□□□ -1.23
UPF3YGR072W TY1A-MR1Q04215 440 aa7.36□□□□□ -1.23
UPF3YGR072W OSH7P38755 437 aa7.35□□□□□ -1.23
UPF3YGR072W CCP1P00431 361 aa7.34□□□□□ -1.23
UPF3YGR072W EMW1P42842 904 aaKnown RBP7.33□□□□□ -1.24
UPF3YGR072W DPH6Q12429 685 aa7.33□□□□□ -1.24
UPF3YGR072W RSC30P38781 883 aa7.32□□□□□ -1.24
UPF3YGR072W PUS1Q12211 544 aaKnown RBP7.31□□□□□ -1.24
UPF3YGR072W LSB3P43603 459 aaKnown RBP7.3□□□□□ -1.24
UPF3YGR072W ATF2P53296 535 aa7.3□□□□□ -1.24
UPF3YGR072W MDJ1P35191 511 aa7.29□□□□□ -1.24
UPF3YGR072W LYS5P50113 272 aa7.26□□□□□ -1.25
UPF3YGR072W DFG5Q05031 458 aa7.25□□□□□ -1.25
UPF3YGR072W PHM7Q12252 991 aa7.25□□□□□ -1.25
UPF3YGR072W RQC2Q12532 1038 aaKnown RBP7.25□□□□□ -1.25
UPF3YGR072W MKS1P34072 584 aa7.23□□□□□ -1.25
UPF3YGR072W FIG4P42837 879 aa7.23□□□□□ -1.25
UPF3YGR072W JJJ3P47138 172 aa7.23□□□□□ -1.25
UPF3YGR072W PKH3Q03306 898 aaPredicted RBP7.23□□□□□ -1.25
UPF3YGR072W KTR1P27810 393 aaKnown RBP7.22□□□□□ -1.25
UPF3YGR072W NAM8Q00539 523 aaKnown RBP7.22□□□□□ -1.25
UPF3YGR072W CDC19P00549 500 aaKnown RBP7.2□□□□□ -1.26
UPF3YGR072W ARG8P18544 423 aa7.19□□□□□ -1.26
UPF3YGR072W GLC3P32775 704 aa7.19□□□□□ -1.26
UPF3YGR072W NSG2P53898 299 aa7.18□□□□□ -1.26
UPF3YGR072W BDS1Q08347 646 aa7.18□□□□□ -1.26
UPF3YGR072W FBP26P32604 452 aa7.15□□□□□ -1.26
UPF3YGR072W THI72Q08579 599 aa7.15□□□□□ -1.26
UPF3YGR072W YNR021WP53723 404 aaKnown RBP7.14□□□□□ -1.27
UPF3YGR072W STE6P12866 1290 aa7.13□□□□□ -1.27
UPF3YGR072W YFL066CP43538 392 aa7.13□□□□□ -1.27
UPF3YGR072W CUZ1P53899 274 aa7.12□□□□□ -1.27
UPF3YGR072W YPR084WQ06821 456 aa7.12□□□□□ -1.27
UPF3YGR072W TEC1P18412 486 aa7.11□□□□□ -1.27
UPF3YGR072W AI1P03875 834 aa7.1□□□□□ -1.27
UPF3YGR072W VTC4P47075 721 aa7.1□□□□□ -1.27
UPF3YGR072W CCT8P47079 568 aaKnown RBP7.09□□□□□ -1.27
UPF3YGR072W NRD1P53617 575 aaKnown RBP RIP-Chip data7.09□□□□□ -1.27not detected
UPF3YGR072W CSN12P47130 423 aa7.08□□□□□ -1.28
UPF3YGR072W RAD59Q12223 238 aa7.08□□□□□ -1.28
UPF3YGR072W DAL1P32375 460 aa7.07□□□□□ -1.28
UPF3YGR072W CEM1P39525 442 aa7.06□□□□□ -1.28
UPF3YGR072W ISU1Q03020 165 aa7.05□□□□□ -1.28
UPF3YGR072W ATG20Q07528 640 aa7.03□□□□□ -1.28
UPF3YGR072W AIM7Q12156 149 aa7.01□□□□□ -1.29
UPF3YGR072W GUT2P32191 649 aa7□□□□□ -1.29
UPF3YGR072W SYT1Q06836 1226 aa7□□□□□ -1.29
UPF3YGR072W YPR053CQ6Q5F3 151 aa7□□□□□ -1.29
UPF3YGR072W DLD3P39976 496 aaKnown RBP6.99□□□□□ -1.29
UPF3YGR072W SBE2P42223 864 aaKnown RBP6.99□□□□□ -1.29
UPF3YGR072W YMR265CQ03508 461 aaKnown RBP6.99□□□□□ -1.29
UPF3YGR072W DIT1P21623 536 aa6.98□□□□□ -1.29
UPF3YGR072W ADE12P80210 433 aaKnown RBP6.98□□□□□ -1.29
UPF3YGR072W UBP15P50101 1230 aa6.97□□□□□ -1.29
UPF3YGR072W MAK16P10962 306 aaPredicted RBP6.96□□□□□ -1.3
UPF3YGR072W SLA1P32790 1244 aa6.96□□□□□ -1.3
UPF3YGR072W SKN7P38889 622 aa6.96□□□□□ -1.3
UPF3YGR072W TDA6Q06466 467 aa6.96□□□□□ -1.3
UPF3YGR072W KRE33P53914 1056 aaKnown RBP6.95□□□□□ -1.3
UPF3YGR072W SBP1P10080 294 aaKnown RBP6.94□□□□□ -1.3
UPF3YGR072W SSN3P39073 555 aa6.94□□□□□ -1.3
UPF3YGR072W TY1A-DR3Q12441 440 aa6.94□□□□□ -1.3
UPF3YGR072W RPP2BP02400 110 aaKnown RBP6.93□□□□□ -1.3
UPF3YGR072W MSN5P52918 1224 aa6.93□□□□□ -1.3
UPF3YGR072W STE20Q03497 939 aaKnown RBP6.93□□□□□ -1.3
UPF3YGR072W FRA1Q07825 749 aa6.93□□□□□ -1.3
UPF3YGR072W WTM2Q12206 467 aa6.93□□□□□ -1.3
UPF3YGR072W YMR187CQ03236 431 aa6.92□□□□□ -1.3
UPF3YGR072W YDR461C-AQ2V2P7 80 aa6.92□□□□□ -1.3
UPF3YGR072W NAF1P53919 492 aaKnown RBP6.89□□□□□ -1.31
UPF3YGR072W DAT1P13483 248 aaKnown RBP6.87□□□□□ -1.31
UPF3YGR072W YNR014WP53719 212 aa6.87□□□□□ -1.31
UPF3YGR072W ISR1Q06098 443 aaKnown RBP6.87□□□□□ -1.31
UPF3YGR072W SPT2P06843 333 aaPredicted RBP6.85□□□□□ -1.31
UPF3YGR072W AHP1P38013 176 aaKnown RBP6.85□□□□□ -1.31
UPF3YGR072W SSA2P10592 639 aaKnown RBP6.84□□□□□ -1.31
UPF3YGR072W YCK2P23292 546 aaKnown RBP6.84□□□□□ -1.31
UPF3YGR072W UTR2P32623 467 aa6.84□□□□□ -1.31
UPF3YGR072W MCX1P38323 520 aaPredicted RBP6.84□□□□□ -1.31
UPF3YGR072W ISF1P32488 338 aa6.83□□□□□ -1.32
UPF3YGR072W UTP7P40055 554 aaKnown RBP6.83□□□□□ -1.32
UPF3YGR072W GPM1P00950 247 aaKnown RBP6.82□□□□□ -1.32
UPF3YGR072W EMP47P43555 445 aa6.82□□□□□ -1.32
UPF3YGR072W APL6P46682 809 aa6.82□□□□□ -1.32
Retrieved 100 of 5,963 RNA–protein pairs in 12.5 ms