RNA–Protein interactions for RNA: YDL077C

VAM6, Transcript of Subunit of the HOPS endocytic tethering complex, yeastyeast

Gene VAM6, Length 3,150 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VAM6YDL077C RTF1P53064 558 aa1.38□□□□□ -2.19
VAM6YDL077C YDL176WQ12027 708 aa1.38□□□□□ -2.19
VAM6YDL077C YNL115CP53925 644 aa1.37□□□□□ -2.19
VAM6YDL077C TBF1Q02457 562 aa1.37□□□□□ -2.19
VAM6YDL077C PDR10P51533 1564 aa1.37□□□□□ -2.19
VAM6YDL077C MOD5P07884 428 aa1.37□□□□□ -2.19
VAM6YDL077C CLC1P17891 233 aa1.37□□□□□ -2.19
VAM6YDL077C PSE1P32337 1089 aaKnown RBP1.37□□□□□ -2.19
VAM6YDL077C PTK2P47116 818 aaKnown RBP1.37□□□□□ -2.19
VAM6YDL077C MSB3P48566 633 aaPredicted RBP1.37□□□□□ -2.19
VAM6YDL077C YMR196WQ04336 1088 aa1.37□□□□□ -2.19
VAM6YDL077C TOP2P06786 1428 aaKnown RBP1.37□□□□□ -2.19
VAM6YDL077C STU1P38198 1513 aa1.37□□□□□ -2.19
VAM6YDL077C SRB8P25648 1427 aa1.37□□□□□ -2.19
VAM6YDL077C TRK2P28584 889 aa1.37□□□□□ -2.19
VAM6YDL077C SCW11P53189 542 aa1.37□□□□□ -2.19
VAM6YDL077C MYO4P32492 1471 aa1.36□□□□□ -2.19
VAM6YDL077C YPK9Q12697 1472 aa1.36□□□□□ -2.19
VAM6YDL077C PET111P08468 800 aa1.36□□□□□ -2.19
VAM6YDL077C MIP1P15801 1254 aa1.36□□□□□ -2.19
VAM6YDL077C SCT1P32784 759 aa1.36□□□□□ -2.19
VAM6YDL077C IXR1P33417 597 aa1.36□□□□□ -2.19
VAM6YDL077C NUG1P40010 520 aaKnown RBP1.36□□□□□ -2.19
VAM6YDL077C CKB1P43639 278 aa1.36□□□□□ -2.19
VAM6YDL077C OPT2Q06593 877 aa1.36□□□□□ -2.19
VAM6YDL077C SWR1Q05471 1514 aa1.36□□□□□ -2.19
VAM6YDL077C MYO2P19524 1574 aaKnown RBP1.36□□□□□ -2.19
VAM6YDL077C GEA1P47102 1408 aaPredicted RBP1.36□□□□□ -2.19
VAM6YDL077C GLY1P37303 387 aaKnown RBP1.36□□□□□ -2.19
VAM6YDL077C ACO2P39533 789 aa1.36□□□□□ -2.19
VAM6YDL077C POL5P39985 1022 aaKnown RBP1.36□□□□□ -2.19
VAM6YDL077C HXT10P43581 546 aa1.36□□□□□ -2.19
VAM6YDL077C NUP85P46673 744 aa1.36□□□□□ -2.19
VAM6YDL077C ALR1Q08269 859 aa1.36□□□□□ -2.19
VAM6YDL077C YPR204WQ08995 1032 aa1.36□□□□□ -2.19
VAM6YDL077C PUS1Q12211 544 aaKnown RBP1.36□□□□□ -2.19
VAM6YDL077C EDE1P34216 1381 aa1.36□□□□□ -2.19
VAM6YDL077C YML133CQ03099 1374 aa1.36□□□□□ -2.19
VAM6YDL077C YLL067CQ07888 1374 aa1.36□□□□□ -2.19
VAM6YDL077C YLL066CQ99208 1374 aa1.36□□□□□ -2.19
VAM6YDL077C TRM732Q03496 1420 aa1.35□□□□□ -2.19
VAM6YDL077C TEA1P47988 759 aa1.35□□□□□ -2.19
VAM6YDL077C ARG82P07250 355 aa1.35□□□□□ -2.19
VAM6YDL077C PBS2P08018 668 aa1.35□□□□□ -2.19
VAM6YDL077C IME2P32581 645 aa1.35□□□□□ -2.19
VAM6YDL077C RTT106P40161 455 aa1.35□□□□□ -2.19
VAM6YDL077C AGE1Q04412 482 aa1.35□□□□□ -2.19
VAM6YDL077C MAM3Q12296 706 aa1.35□□□□□ -2.19
VAM6YDL077C TSC11P40061 1430 aa1.35□□□□□ -2.19
VAM6YDL077C POL1P13382 1468 aa1.35□□□□□ -2.19
VAM6YDL077C TY1B-DR4Q07793 1604 aa1.35□□□□□ -2.19
VAM6YDL077C RPP0P05317 312 aaKnown RBP1.35□□□□□ -2.19
VAM6YDL077C SLY41P22215 453 aa1.35□□□□□ -2.19
VAM6YDL077C PRS1P32895 427 aaKnown RBP1.35□□□□□ -2.19
VAM6YDL077C YFR016CP43597 1233 aaKnown RBP1.35□□□□□ -2.19
VAM6YDL077C LSC2P53312 427 aa1.35□□□□□ -2.19
VAM6YDL077C TPD3P31383 635 aa1.34□□□□□ -2.19
VAM6YDL077C DEF1P35732 738 aaKnown RBP1.34□□□□□ -2.19
VAM6YDL077C SNF7P39929 240 aaKnown RBP1.34□□□□□ -2.19
VAM6YDL077C UBP2Q01476 1272 aa1.34□□□□□ -2.19
VAM6YDL077C BUD4P47136 1447 aa1.34□□□□□ -2.19
VAM6YDL077C SSK2P53599 1579 aa1.34□□□□□ -2.2
VAM6YDL077C PDC1P06169 563 aaKnown RBP1.34□□□□□ -2.2
VAM6YDL077C YIR007WP40566 764 aa1.34□□□□□ -2.2
VAM6YDL077C YGR130CP53278 816 aa1.34□□□□□ -2.2
VAM6YDL077C HPF1Q05164 967 aa1.34□□□□□ -2.2
VAM6YDL077C ESC1Q03661 1658 aaKnown RBP1.34□□□□□ -2.2
VAM6YDL077C SRP54P20424 541 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C NMD2P38798 1089 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C ICP55P40051 511 aa1.33□□□□□ -2.2
VAM6YDL077C LSB3P43603 459 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C RPA14P50106 137 aa1.33□□□□□ -2.2
VAM6YDL077C PIL1P53252 339 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C EAF7P53911 425 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C YDL206WQ12424 762 aa1.33□□□□□ -2.2
VAM6YDL077C SPT7P35177 1332 aa1.33□□□□□ -2.2
VAM6YDL077C YRF1-4O13559 1382 aa1.33□□□□□ -2.2
VAM6YDL077C ESP1Q03018 1630 aa1.33□□□□□ -2.2
VAM6YDL077C HSL1P34244 1518 aa1.33□□□□□ -2.2
VAM6YDL077C SIT4P20604 311 aa1.33□□□□□ -2.2
VAM6YDL077C BYE1P36106 594 aa1.33□□□□□ -2.2
VAM6YDL077C NAB3P38996 802 aaKnown RBP RIP-Chip data1.33□□□□□ -2.2not detected
VAM6YDL077C IES2P40154 320 aa1.33□□□□□ -2.2
VAM6YDL077C TAN1P53072 289 aaPredicted RBP1.33□□□□□ -2.2
VAM6YDL077C PUS6P53294 404 aa1.33□□□□□ -2.2
VAM6YDL077C PHM7Q12252 991 aa1.33□□□□□ -2.2
VAM6YDL077C ARO1P08566 1588 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C MMS1Q06211 1407 aa1.33□□□□□ -2.2
VAM6YDL077C YSP2Q06681 1438 aa1.33□□□□□ -2.2
VAM6YDL077C NOT3P06102 836 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C SPC110P32380 944 aa1.33□□□□□ -2.2
VAM6YDL077C PAF1P38351 445 aa1.33□□□□□ -2.2
VAM6YDL077C YPR097WQ06839 1073 aa1.33□□□□□ -2.2
VAM6YDL077C LSP1Q12230 341 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C NOP58Q12499 511 aaKnown RBP1.33□□□□□ -2.2
VAM6YDL077C GCN2P15442 1659 aa1.32□□□□□ -2.2
VAM6YDL077C GEA2P39993 1459 aaKnown RBP1.32□□□□□ -2.2
VAM6YDL077C NUP159P40477 1460 aa1.32□□□□□ -2.2
VAM6YDL077C SWI3P32591 825 aa1.32□□□□□ -2.2
VAM6YDL077C MRT4P33201 236 aaKnown RBP1.32□□□□□ -2.2
Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms