RNA–Protein interactions for RNA: ENST00000642021.1

PHGDH-233, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,794 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-233ENST00000642021 PTPRGP23470 1445 aa18.67■□□□□ 0.58
PHGDH-233ENST00000642021 KDM5DQ9BY66 1539 aa18.66■□□□□ 0.58
PHGDH-233ENST00000642021 CCDC136Q96JN2 1154 aa18.65■□□□□ 0.58
PHGDH-233ENST00000642021 LRPPRCP42704 1394 aaKnown RBP18.65■□□□□ 0.58
PHGDH-233ENST00000642021 MYBBP1AQ9BQG0 1328 aaKnown RBP18.64■□□□□ 0.57
PHGDH-233ENST00000642021 NBPF1Q3BBV0 1214 aa18.63■□□□□ 0.57
PHGDH-233ENST00000642021 RGL3Q3MIN7 710 aa18.62■□□□□ 0.57
PHGDH-233ENST00000642021 RALBP1Q15311 655 aa18.62■□□□□ 0.57
PHGDH-233ENST00000642021 BRD4O60885 1362 aaPredicted RBP18.61■□□□□ 0.57
PHGDH-233ENST00000642021 SALL2Q9Y467 1007 aaPredicted RBP18.6■□□□□ 0.57
PHGDH-233ENST00000642021 FAM135AQ9P2D6 1515 aa18.58■□□□□ 0.57
PHGDH-233ENST00000642021 ARHGEF5Q12774 1597 aa18.58■□□□□ 0.56
PHGDH-233ENST00000642021 PER1O15534 1290 aaPredicted RBP18.57■□□□□ 0.56
PHGDH-233ENST00000642021 PRAG1Q86YV5 1406 aa18.57■□□□□ 0.56
PHGDH-233ENST00000642021 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.57■□□□□ 0.565e-16■■□□□ 13.6
PHGDH-233ENST00000642021 SAMD9LQ8IVG5 1584 aa18.56■□□□□ 0.56
PHGDH-233ENST00000642021 CCDC141Q6ZP82 1450 aa18.56■□□□□ 0.56
PHGDH-233ENST00000642021 PLA2R1Q13018 1463 aa18.56■□□□□ 0.56
PHGDH-233ENST00000642021 KTN1Q86UP2 1357 aaKnown RBP18.56■□□□□ 0.56
PHGDH-233ENST00000642021 PAK3O75914 559 aaPredicted RBP18.56■□□□□ 0.56
PHGDH-233ENST00000642021 CCDC144AA2RUR9 1427 aa18.55■□□□□ 0.56
PHGDH-233ENST00000642021 NLRP13Q86W25 1043 aa18.54■□□□□ 0.56
PHGDH-233ENST00000642021 PARD3Q8TEW0 1356 aa18.54■□□□□ 0.56
PHGDH-233ENST00000642021 RRP1P56182 461 aaKnown RBP18.53■□□□□ 0.56
PHGDH-233ENST00000642021 E9PCH4 1651 aa18.53■□□□□ 0.56
PHGDH-233ENST00000642021 RSPH4AQ5TD94 716 aa18.53■□□□□ 0.56
PHGDH-233ENST00000642021 EXOC6Q8TAG9 804 aa18.53■□□□□ 0.56
PHGDH-233ENST00000642021 NOP58Q9Y2X3 529 aaKnown RBP18.52■□□□□ 0.56
PHGDH-233ENST00000642021 CDC42BPBQ9Y5S2 1711 aa18.52■□□□□ 0.56
PHGDH-233ENST00000642021 TESK2Q96S53 571 aa18.51■□□□□ 0.55
PHGDH-233ENST00000642021 CC2D1BQ5T0F9 858 aaKnown RBP18.5■□□□□ 0.55
PHGDH-233ENST00000642021 CDCA7LQ96GN5 454 aa18.5■□□□□ 0.55
PHGDH-233ENST00000642021 RCAN3Q9UKA8 241 aa18.5■□□□□ 0.55
PHGDH-233ENST00000642021 A2MP01023 1474 aa18.5■□□□□ 0.55
PHGDH-233ENST00000642021 TRPM1Q7Z4N2 1603 aa18.5■□□□□ 0.55
PHGDH-233ENST00000642021 DISP3Q9P2K9 1392 aa18.49■□□□□ 0.55
PHGDH-233ENST00000642021 GPRASP1Q5JY77 1395 aa18.49■□□□□ 0.55
PHGDH-233ENST00000642021 SYCP2Q9BX26 1530 aa18.48■□□□□ 0.55
PHGDH-233ENST00000642021 PREX2Q70Z35 1606 aa18.47■□□□□ 0.55
PHGDH-233ENST00000642021 PANK3Q9H999 370 aa18.47■□□□□ 0.55
PHGDH-233ENST00000642021 PLEKHH2Q8IVE3 1493 aa18.46■□□□□ 0.55
PHGDH-233ENST00000642021 IPO9Q96P70 1041 aaKnown RBP18.44■□□□□ 0.54
PHGDH-233ENST00000642021 COL17A1Q9UMD9 1497 aaPredicted RBP18.44■□□□□ 0.54
PHGDH-233ENST00000642021 ARHGAP5Q13017 1502 aa18.43■□□□□ 0.54
PHGDH-233ENST00000642021 PDE3BQ13370 1112 aa18.43■□□□□ 0.54
PHGDH-233ENST00000642021 TTC37Q6PGP7 1564 aa18.43■□□□□ 0.54
PHGDH-233ENST00000642021 NBR1Q14596 966 aa18.43■□□□□ 0.54
PHGDH-233ENST00000642021 ANP32AP39687 249 aaKnown RBP18.42■□□□□ 0.54
PHGDH-233ENST00000642021 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.42■□□□□ 0.546e-6■■■■■ 38.2
PHGDH-233ENST00000642021 UNC13BO14795 1591 aa18.41■□□□□ 0.54
PHGDH-233ENST00000642021 PLIN1O60240 522 aa18.41■□□□□ 0.54
PHGDH-233ENST00000642021 ERBINQ96RT1 1412 aa18.4■□□□□ 0.54
PHGDH-233ENST00000642021 PRDM15P57071 1507 aaPredicted RBP18.4■□□□□ 0.54
PHGDH-233ENST00000642021 WASHC2CQ9Y4E1 1318 aa18.4■□□□□ 0.54
PHGDH-233ENST00000642021 MAST1Q9Y2H9 1570 aa18.39■□□□□ 0.53
PHGDH-233ENST00000642021 TMF1P82094 1093 aa18.38■□□□□ 0.53
PHGDH-233ENST00000642021 DEKP35659 375 aaKnown RBP18.38■□□□□ 0.53
PHGDH-233ENST00000642021 ZBTB47Q9UFB7 747 aaPredicted RBP18.36■□□□□ 0.53
PHGDH-233ENST00000642021 IQGAP3Q86VI3 1631 aa18.35■□□□□ 0.53
PHGDH-233ENST00000642021 BLMP54132 1417 aaPredicted RBP18.35■□□□□ 0.53
PHGDH-233ENST00000642021 MYT1LQ9UL68 1186 aa18.35■□□□□ 0.53
PHGDH-233ENST00000642021 ADAMTS8Q9UP79 889 aa18.35■□□□□ 0.53
PHGDH-233ENST00000642021 ATP10AO60312 1499 aa18.34■□□□□ 0.53
PHGDH-233ENST00000642021 TCERG1O14776 1098 aaKnown RBP18.34■□□□□ 0.53
PHGDH-233ENST00000642021 SKAP1Q86WV1 359 aa18.34■□□□□ 0.53
PHGDH-233ENST00000642021 PDE4AP27815 886 aa18.34■□□□□ 0.53
PHGDH-233ENST00000642021 LAMC1P11047 1609 aa18.34■□□□□ 0.53
PHGDH-233ENST00000642021 NPM2Q86SE8 214 aaKnown RBP18.33■□□□□ 0.53
PHGDH-233ENST00000642021 ERCC6L2Q5T890 1561 aa18.33■□□□□ 0.52
PHGDH-233ENST00000642021 PLXNC1O60486 1568 aa18.32■□□□□ 0.52
PHGDH-233ENST00000642021 MYO5CQ9NQX4 1742 aa18.32■□□□□ 0.52
PHGDH-233ENST00000642021 DUOX2Q9NRD8 1548 aa18.32■□□□□ 0.52
PHGDH-233ENST00000642021 CRBNQ96SW2 442 aa18.31■□□□□ 0.52
PHGDH-233ENST00000642021 MAGI2Q86UL8 1455 aa18.31■□□□□ 0.52
PHGDH-233ENST00000642021 INSRP06213 1382 aa18.3■□□□□ 0.52
PHGDH-233ENST00000642021 C20orf194Q5TEA3 1177 aa18.3■□□□□ 0.52
PHGDH-233ENST00000642021 BACH2Q9BYV9 841 aa18.3■□□□□ 0.52
PHGDH-233ENST00000642021 WDR7Q9Y4E6 1490 aa18.29■□□□□ 0.52
PHGDH-233ENST00000642021 EIF2AK4Q9P2K8 1649 aaKnown RBP18.29■□□□□ 0.52
PHGDH-233ENST00000642021 PPP2R1AP30153 589 aa18.28■□□□□ 0.52
PHGDH-233ENST00000642021 TRAPPC8Q9Y2L5 1435 aa18.28■□□□□ 0.52
PHGDH-233ENST00000642021 PLCH2O75038 1416 aa18.28■□□□□ 0.52
PHGDH-233ENST00000642021 ABCC2Q92887 1545 aa18.27■□□□□ 0.52
PHGDH-233ENST00000642021 AMER1Q5JTC6 1135 aaPredicted RBP18.27■□□□□ 0.52
PHGDH-233ENST00000642021 EFCAB2Q5VUJ9 269 aa18.27■□□□□ 0.52
PHGDH-233ENST00000642021 ANO8Q9HCE9 1232 aaPredicted RBP18.27■□□□□ 0.51
PHGDH-233ENST00000642021 KNSTRNQ9Y448 316 aa18.27■□□□□ 0.51
PHGDH-233ENST00000642021 ZMYM4Q5VZL5 1548 aa18.26■□□□□ 0.51
PHGDH-233ENST00000642021 PLEKHH1Q9ULM0 1364 aa18.26■□□□□ 0.51
PHGDH-233ENST00000642021 AFAP1Q8N556 730 aa18.26■□□□□ 0.51
PHGDH-233ENST00000642021 CHD1O14646 1710 aa18.26■□□□□ 0.51
PHGDH-233ENST00000642021 MS4A1P11836 297 aa18.25■□□□□ 0.51
PHGDH-233ENST00000642021 EIF5BO60841 1220 aaKnown RBP18.25■□□□□ 0.51
PHGDH-233ENST00000642021 SHROOM2Q13796 1616 aa18.24■□□□□ 0.51
PHGDH-233ENST00000642021 RNF17Q9BXT8 1623 aaKnown RBP18.23■□□□□ 0.51
PHGDH-233ENST00000642021 DUSP27Q5VZP5 1158 aa18.23■□□□□ 0.51
PHGDH-233ENST00000642021 WDR43Q15061 677 aaKnown RBP eCLIP18.21■□□□□ 0.51
PHGDH-233ENST00000642021 SPAG9O60271 1321 aaKnown RBP18.2■□□□□ 0.5
PHGDH-233ENST00000642021 ZNF521Q96K83 1311 aa18.2■□□□□ 0.5
PHGDH-233ENST00000642021 MADDQ8WXG6 1647 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms