RNA–Protein interactions for RNA: ENST00000639496.1

KCNQ3-208, Transcript of potassium voltage-gated channel subfamily Q member 3, human

TSL 5

Gene KCNQ3, Length 4,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
KCNQ3-208	ENST00000639496	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	12.88	□□□□□ -0.35
KCNQ3-208	ENST00000639496	PMFBP1	Q8TBY8	1022 aa		12.88	□□□□□ -0.35
KCNQ3-208	ENST00000639496	ATAD2B	Q9ULI0	1458 aa		12.88	□□□□□ -0.35
KCNQ3-208	ENST00000639496	FANCD2	Q9BXW9	1451 aa		12.87	□□□□□ -0.35
KCNQ3-208	ENST00000639496	TOP2A	P11388	1531 aa	Known RBP	12.86	□□□□□ -0.35
KCNQ3-208	ENST00000639496	MSH5	O43196	834 aa		12.86	□□□□□ -0.35
KCNQ3-208	ENST00000639496	NCBP3	Q53F19	620 aa	Known RBP	12.86	□□□□□ -0.35
KCNQ3-208	ENST00000639496	PHLDB1	Q86UU1	1377 aa		12.86	□□□□□ -0.35
KCNQ3-208	ENST00000639496	PDE3B	Q13370	1112 aa		12.86	□□□□□ -0.35
KCNQ3-208	ENST00000639496	CGNL1	Q0VF96	1302 aa		12.85	□□□□□ -0.35
KCNQ3-208	ENST00000639496	TRIM6-TRIM34	B2RNG4	842 aa		12.85	□□□□□ -0.35
KCNQ3-208	ENST00000639496	MEX3C	Q5U5Q3	659 aa	Known RBP	12.85	□□□□□ -0.35
KCNQ3-208	ENST00000639496	TTC5	Q8N0Z6	440 aa		12.85	□□□□□ -0.35
KCNQ3-208	ENST00000639496	PSME1	Q06323	249 aa		12.84	□□□□□ -0.35
KCNQ3-208	ENST00000639496	KIAA2012	Q0VF49	1180 aa		12.84	□□□□□ -0.35
KCNQ3-208	ENST00000639496	TOMM22	Q9NS69	142 aa		12.83	□□□□□ -0.36
KCNQ3-208	ENST00000639496	KIF3A	Q9Y496	699 aa		12.83	□□□□□ -0.36
KCNQ3-208	ENST00000639496	CENPJ	Q9HC77	1338 aa	Predicted RBP	12.83	□□□□□ -0.36
KCNQ3-208	ENST00000639496	NEXN	Q0ZGT2	675 aa		12.83	□□□□□ -0.36
KCNQ3-208	ENST00000639496	ATF3	P18847	181 aa		12.83	□□□□□ -0.36
KCNQ3-208	ENST00000639496	DRC7	Q8IY82	874 aa		12.82	□□□□□ -0.36
KCNQ3-208	ENST00000639496	STAC3	Q96MF2	364 aa		12.82	□□□□□ -0.36
KCNQ3-208	ENST00000639496	NOP58	Q9Y2X3	529 aa	Known RBP	12.82	□□□□□ -0.36
KCNQ3-208	ENST00000639496	PTMS	P20962	102 aa		12.82	□□□□□ -0.36
KCNQ3-208	ENST00000639496	GBP4	Q96PP9	640 aa		12.81	□□□□□ -0.36
KCNQ3-208	ENST00000639496	MINK1	Q8N4C8	1332 aa	Predicted RBP	12.81	□□□□□ -0.36
KCNQ3-208	ENST00000639496	LRRFIP1	Q32MZ4	808 aa	Known RBP	12.81	□□□□□ -0.36
KCNQ3-208	ENST00000639496	ST20-MTHFS	A0A0A6YYL1	179 aa		12.81	□□□□□ -0.36
KCNQ3-208	ENST00000639496	CHMP4C	Q96CF2	233 aa		12.81	□□□□□ -0.36
KCNQ3-208	ENST00000639496	RASSF8	Q8NHQ8	419 aa		12.8	□□□□□ -0.36
KCNQ3-208	ENST00000639496	CLUAP1	Q96AJ1	413 aa		12.8	□□□□□ -0.36
KCNQ3-208	ENST00000639496	HSP90B1	P14625	803 aa	Known RBP	12.8	□□□□□ -0.36
KCNQ3-208	ENST00000639496	CCDC146	Q8IYE0	955 aa		12.79	□□□□□ -0.36
KCNQ3-208	ENST00000639496	MARCH6	O60337	910 aa		12.79	□□□□□ -0.36
KCNQ3-208	ENST00000639496	SYAP1	Q96A49	352 aa	Predicted RBP	12.78	□□□□□ -0.36
KCNQ3-208	ENST00000639496	NOL10	Q9BSC4	688 aa	Known RBP	12.78	□□□□□ -0.36
KCNQ3-208	ENST00000639496	PANK3	Q9H999	370 aa		12.78	□□□□□ -0.36
KCNQ3-208	ENST00000639496	KIF15	Q9NS87	1388 aa		12.77	□□□□□ -0.36
KCNQ3-208	ENST00000639496	TCERG1	O14776	1098 aa	Known RBP	12.77	□□□□□ -0.37
KCNQ3-208	ENST00000639496	TPM4	P67936	248 aa		12.77	□□□□□ -0.37
KCNQ3-208	ENST00000639496	SYTL4	Q96C24	671 aa	Predicted RBP	12.77	□□□□□ -0.37
KCNQ3-208	ENST00000639496	RAPGEF4	Q8WZA2	1011 aa		12.77	□□□□□ -0.37
KCNQ3-208	ENST00000639496	DDX58	O95786	925 aa	Known RBP	12.76	□□□□□ -0.37
KCNQ3-208	ENST00000639496	AMOTL1	Q8IY63	956 aa		12.76	□□□□□ -0.37
KCNQ3-208	ENST00000639496	SPRYD3	Q8NCJ5	442 aa		12.76	□□□□□ -0.37
KCNQ3-208	ENST00000639496	CSPP1	Q1MSJ5	1256 aa		12.76	□□□□□ -0.37
KCNQ3-208	ENST00000639496	GAPVD1	Q14C86	1478 aa		12.75	□□□□□ -0.37
KCNQ3-208	ENST00000639496	NGEF	Q8N5V2	710 aa		12.75	□□□□□ -0.37
KCNQ3-208	ENST00000639496	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	DCAF8L1	A6NGE4	600 aa		12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	ELL2	O00472	640 aa	Predicted RBP	12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	C9orf78	Q9NZ63	289 aa	Predicted RBP	12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	VPS53	Q5VIR6	699 aa		12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	MSN	P26038	577 aa	Known RBP	12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	TRIM34	Q9BYJ4	488 aa		12.74	□□□□□ -0.37
KCNQ3-208	ENST00000639496	DIAPH1	O60610	1272 aa	Known RBP	12.73	□□□□□ -0.37
KCNQ3-208	ENST00000639496	CPLX2	Q6PUV4	134 aa	Known RBP	12.73	□□□□□ -0.37
KCNQ3-208	ENST00000639496	DHX57	Q6P158	1386 aa	Known RBP	12.73	□□□□□ -0.37
KCNQ3-208	ENST00000639496	KIF16B	Q96L93	1317 aa		12.73	□□□□□ -0.37
KCNQ3-208	ENST00000639496	AKAP17A	Q02040	695 aa	Known RBP	12.73	□□□□□ -0.37
KCNQ3-208	ENST00000639496	MYOM3	Q5VTT5	1437 aa		12.73	□□□□□ -0.37
KCNQ3-208	ENST00000639496	MFAP1	P55081	439 aa	Known RBP	12.72	□□□□□ -0.37
KCNQ3-208	ENST00000639496	RRP7A	Q9Y3A4	280 aa	Known RBP	12.72	□□□□□ -0.37
KCNQ3-208	ENST00000639496	ST18	O60284	1047 aa		12.72	□□□□□ -0.37
KCNQ3-208	ENST00000639496	CTDP1	Q9Y5B0	961 aa	Predicted RBP	12.72	□□□□□ -0.37
KCNQ3-208	ENST00000639496	EIF2S2	P20042	333 aa	Known RBP	12.71	□□□□□ -0.37
KCNQ3-208	ENST00000639496	SYNE3	Q6ZMZ3	975 aa		12.71	□□□□□ -0.37
KCNQ3-208	ENST00000639496	WASHC2A	Q641Q2	1341 aa		12.71	□□□□□ -0.37
KCNQ3-208	ENST00000639496		E9PSI1	815 aa		12.71	□□□□□ -0.37
KCNQ3-208	ENST00000639496	SF3A1	Q15459	793 aa	Known RBP	12.71	□□□□□ -0.37
KCNQ3-208	ENST00000639496	NAP1L5	Q96NT1	182 aa	Predicted RBP	12.71	□□□□□ -0.37
KCNQ3-208	ENST00000639496	PHF23	Q9BUL5	403 aa	Predicted RBP	12.71	□□□□□ -0.38
KCNQ3-208	ENST00000639496	ZKSCAN2	Q63HK3	967 aa		12.71	□□□□□ -0.38
KCNQ3-208	ENST00000639496	VPS37D	Q86XT2	251 aa		12.71	□□□□□ -0.38
KCNQ3-208	ENST00000639496	NLRP2	Q9NX02	1062 aa		12.7	□□□□□ -0.38
KCNQ3-208	ENST00000639496	CEP89	Q96ST8	783 aa		12.7	□□□□□ -0.38
KCNQ3-208	ENST00000639496	WIZ	O95785	1651 aa		12.69	□□□□□ -0.38
KCNQ3-208	ENST00000639496	API5	Q9BZZ5	524 aa	Known RBP	12.69	□□□□□ -0.38
KCNQ3-208	ENST00000639496	RUFY2	Q8WXA3	655 aa		12.68	□□□□□ -0.38
KCNQ3-208	ENST00000639496	GPRASP1	Q5JY77	1395 aa		12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	NOC3L	Q8WTT2	800 aa	Known RBP	12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	SLK	Q9H2G2	1235 aa	Predicted RBP	12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	DIAPH3	Q9NSV4	1193 aa		12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	PROSER2	Q86WR7	435 aa	Predicted RBP	12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	RILPL2	Q969X0	211 aa		12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	TCEAL9	Q9UHQ7	104 aa		12.67	□□□□□ -0.38
KCNQ3-208	ENST00000639496	NLRP6	P59044	892 aa		12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	MIA2	Q96PC5	1412 aa		12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	IGF1R	P08069	1367 aa		12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	USP47	Q96K76	1375 aa		12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	TXNDC2	Q86VQ3	553 aa		12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	THEMIS	Q8N1K5	641 aa	Predicted RBP	12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	RBM33	Q96EV2	1170 aa	Known RBP	12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	FAM184A	Q8NB25	1140 aa		12.66	□□□□□ -0.38
KCNQ3-208	ENST00000639496	SMARCA4	P51532	1647 aa		12.65	□□□□□ -0.38
KCNQ3-208	ENST00000639496	KLHL34	Q8N239	644 aa		12.65	□□□□□ -0.38
KCNQ3-208	ENST00000639496	FGD5	Q6ZNL6	1462 aa		12.65	□□□□□ -0.38
KCNQ3-208	ENST00000639496	FKBP5	Q13451	457 aa	Predicted RBP	12.65	□□□□□ -0.38
KCNQ3-208	ENST00000639496	G3BP1	Q13283	466 aa	Known RBP eCLIP	12.65	□□□□□ -0.38
KCNQ3-208	ENST00000639496	PRM3	Q9NNZ6	103 aa		12.65	□□□□□ -0.38

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms