RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 SCAPERQ9BY12 1400 aa6.08□□□□□ -1.44
SCN1A-210ENST00000635776 KDM5DQ9BY66 1539 aa6.08□□□□□ -1.44
SCN1A-210ENST00000635776 WDR43Q15061 677 aaKnown RBP eCLIP6.08□□□□□ -1.44
SCN1A-210ENST00000635776 PPP4R2Q9NY27 417 aa6.08□□□□□ -1.44
SCN1A-210ENST00000635776 KIF3BO15066 747 aa6.07□□□□□ -1.44
SCN1A-210ENST00000635776 PZPP20742 1482 aa6.07□□□□□ -1.44
SCN1A-210ENST00000635776 BRD4O60885 1362 aaPredicted RBP6.07□□□□□ -1.44
SCN1A-210ENST00000635776 KDM5BQ9UGL1 1544 aa6.07□□□□□ -1.44
SCN1A-210ENST00000635776 WDR7Q9Y4E6 1490 aa6.07□□□□□ -1.44
SCN1A-210ENST00000635776 RPGRIP1LQ68CZ1 1315 aa6.07□□□□□ -1.44
SCN1A-210ENST00000635776 ESF1Q9H501 851 aaKnown RBP6.07□□□□□ -1.44
SCN1A-210ENST00000635776 HDGFP51858 240 aaKnown RBP6.06□□□□□ -1.44
SCN1A-210ENST00000635776 MBD5Q9P267 1494 aa6.06□□□□□ -1.44
SCN1A-210ENST00000635776 NBPF8Q3BBV2 869 aa6.06□□□□□ -1.44
SCN1A-210ENST00000635776 ST20-MTHFSA0A0A6YYL1 179 aa6.06□□□□□ -1.44
SCN1A-210ENST00000635776 ADGBQ8N7X0 1667 aa6.06□□□□□ -1.44
SCN1A-210ENST00000635776 NEFMP07197 916 aa6.05□□□□□ -1.44
SCN1A-210ENST00000635776 MAST1Q9Y2H9 1570 aa6.05□□□□□ -1.44
SCN1A-210ENST00000635776 DHX29Q7Z478 1369 aaKnown RBP6.05□□□□□ -1.44
SCN1A-210ENST00000635776 CFAP53Q96M91 514 aa6.05□□□□□ -1.44
SCN1A-210ENST00000635776 CHGAP10645 457 aaKnown RBP6.04□□□□□ -1.44
SCN1A-210ENST00000635776 PPP6R1Q9UPN7 881 aa6.04□□□□□ -1.44
SCN1A-210ENST00000635776 NUDCQ9Y266 331 aa6.04□□□□□ -1.44
SCN1A-210ENST00000635776 FAM135AQ9P2D6 1515 aa6.04□□□□□ -1.44
SCN1A-210ENST00000635776 VGFO15240 615 aaPredicted RBP6.04□□□□□ -1.44
SCN1A-210ENST00000635776 ATP10AO60312 1499 aa6.04□□□□□ -1.44
SCN1A-210ENST00000635776 INSRP06213 1382 aa6.04□□□□□ -1.44
SCN1A-210ENST00000635776 GPRASP1Q5JY77 1395 aa6.04□□□□□ -1.44
SCN1A-210ENST00000635776 ADGRL1O94910 1474 aa6.03□□□□□ -1.44
SCN1A-210ENST00000635776 EIF2AK4Q9P2K8 1649 aaKnown RBP6.03□□□□□ -1.44
SCN1A-210ENST00000635776 STAG3Q9UJ98 1225 aa6.03□□□□□ -1.44
SCN1A-210ENST00000635776 SYCP2Q9BX26 1530 aa6.03□□□□□ -1.44
SCN1A-210ENST00000635776 FANCAO15360 1455 aa6.03□□□□□ -1.44
SCN1A-210ENST00000635776 PNNQ9H307 717 aaKnown RBP6.02□□□□□ -1.45
SCN1A-210ENST00000635776 ZNF518AQ6AHZ1 1483 aa6.02□□□□□ -1.45
SCN1A-210ENST00000635776 PREX2Q70Z35 1606 aa6.02□□□□□ -1.45
SCN1A-210ENST00000635776 BCANQ96GW7 911 aa6.02□□□□□ -1.45
SCN1A-210ENST00000635776 PLXNC1O60486 1568 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 CCDC136Q96JN2 1154 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 AFAP1Q8N556 730 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 SLC52A1Q9NWF4 448 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 SPATA31E1Q6ZUB1 1445 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 SHROOM2Q13796 1616 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 PUS7Q96PZ0 661 aaKnown RBP6.01□□□□□ -1.45
SCN1A-210ENST00000635776 PRAG1Q86YV5 1406 aa6.01□□□□□ -1.45
SCN1A-210ENST00000635776 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6□□□□□ -1.45
SCN1A-210ENST00000635776 CD109Q6YHK3 1445 aa6□□□□□ -1.45
SCN1A-210ENST00000635776 CNGB1Q14028 1251 aaPredicted RBP6□□□□□ -1.45
SCN1A-210ENST00000635776 MS4A1P11836 297 aa6□□□□□ -1.45
SCN1A-210ENST00000635776 GGT6Q6P531 493 aa6□□□□□ -1.45
SCN1A-210ENST00000635776 SCAF11Q99590 1463 aaKnown RBP5.99□□□□□ -1.45
SCN1A-210ENST00000635776 CLASP1Q7Z460 1538 aa5.99□□□□□ -1.45
SCN1A-210ENST00000635776 ASXL2Q76L83 1435 aa5.99□□□□□ -1.45
SCN1A-210ENST00000635776 SMG6Q86US8 1419 aaKnown RBP5.99□□□□□ -1.45
SCN1A-210ENST00000635776 DENND4BO75064 1496 aaPredicted RBP5.99□□□□□ -1.45
SCN1A-210ENST00000635776 NEO1Q92859 1461 aa5.99□□□□□ -1.45
SCN1A-210ENST00000635776 ANP32AP39687 249 aaKnown RBP5.99□□□□□ -1.45
SCN1A-210ENST00000635776 SAMD9LQ8IVG5 1584 aa5.98□□□□□ -1.45
SCN1A-210ENST00000635776 DAXXQ9UER7 740 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-210ENST00000635776 ABCC1P33527 1531 aa5.98□□□□□ -1.45
SCN1A-210ENST00000635776 CENPJQ9HC77 1338 aaPredicted RBP5.98□□□□□ -1.45
SCN1A-210ENST00000635776 AAMPQ13685 434 aa5.98□□□□□ -1.45
SCN1A-210ENST00000635776 PANK3Q9H999 370 aa5.98□□□□□ -1.45
SCN1A-210ENST00000635776 EVC2Q86UK5 1308 aa5.98□□□□□ -1.45
SCN1A-210ENST00000635776 NPC1L1Q9UHC9 1359 aa5.98□□□□□ -1.45
SCN1A-210ENST00000635776 TRAPPC8Q9Y2L5 1435 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 CROCC2H7BZ55 1655 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 PNISRQ8TF01 805 aaKnown RBP5.97□□□□□ -1.45
SCN1A-210ENST00000635776 CHMP4BQ9H444 224 aaKnown RBP5.97□□□□□ -1.45
SCN1A-210ENST00000635776 CFAP74Q9C0B2 1584 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 A2MP01023 1474 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 ZMYM4Q5VZL5 1548 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 TERF2IPQ9NYB0 399 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.97□□□□□ -1.45
SCN1A-210ENST00000635776 NINLQ9Y2I6 1382 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 CGNL1Q0VF96 1302 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 MYO5CQ9NQX4 1742 aa5.97□□□□□ -1.45
SCN1A-210ENST00000635776 HAP1P54257 671 aaPredicted RBP5.97□□□□□ -1.45
SCN1A-210ENST00000635776 UNC13BO14795 1591 aa5.96□□□□□ -1.45
SCN1A-210ENST00000635776 EIF5BO60841 1220 aaKnown RBP5.96□□□□□ -1.45
SCN1A-210ENST00000635776 ATP7AQ04656 1500 aa5.96□□□□□ -1.45
SCN1A-210ENST00000635776 CANXP27824 592 aaKnown RBP5.96□□□□□ -1.45
SCN1A-210ENST00000635776 MAGI2Q86UL8 1455 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 LRRIQ1Q96JM4 1722 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 PTPRTO14522 1441 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 RCAN3Q9UKA8 241 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 MLH3Q9UHC1 1453 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 MORC1Q86VD1 984 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 POGKQ9P215 609 aa5.96□□□□□ -1.46
SCN1A-210ENST00000635776 CC2D1BQ5T0F9 858 aaKnown RBP5.96□□□□□ -1.46
SCN1A-210ENST00000635776 HDGFL2Q7Z4V5 671 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-210ENST00000635776 SBNO2Q9Y2G9 1366 aa5.95□□□□□ -1.46
SCN1A-210ENST00000635776 GOLGA2Q08379 1002 aa5.95□□□□□ -1.46
SCN1A-210ENST00000635776 COL17A1Q9UMD9 1497 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-210ENST00000635776 PARD3Q8TEW0 1356 aa5.95□□□□□ -1.46
SCN1A-210ENST00000635776 CHD1O14646 1710 aa5.95□□□□□ -1.46
SCN1A-210ENST00000635776 C11orf95C9JLR9 678 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-210ENST00000635776 NSD2O96028 1365 aa5.95□□□□□ -1.46
SCN1A-210ENST00000635776 PRDM15P57071 1507 aaPredicted RBP5.94□□□□□ -1.46
SCN1A-210ENST00000635776 KDM6BO15054 1643 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms