RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 WASHC2AQ641Q2 1341 aa6.87□□□□□ -1.31
SCN1A-209ENST00000635750 RB1CC1Q8TDY2 1594 aa6.87□□□□□ -1.31
SCN1A-209ENST00000635750 IPO7O95373 1038 aaKnown RBP6.87□□□□□ -1.31
SCN1A-209ENST00000635750 CCAR1Q8IX12 1150 aaKnown RBP6.87□□□□□ -1.31
SCN1A-209ENST00000635750 FAM184AQ8NB25 1140 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 PMFBP1Q8TBY8 1022 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 C1orf141Q5JVX7 400 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 B4GALNT3Q6L9W6 998 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 HOOK1Q9UJC3 728 aaKnown RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 RDXP35241 583 aaKnown RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 TRIM29Q14134 588 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 CCDC180Q9P1Z9 1646 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 PATL2C9JE40 543 aaKnown RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 U2AF1L5P0DN76 240 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 U2AF1Q01081 240 aaKnown RBP eCLIP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 CT47A1Q5JQC4 288 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 PAF1Q8N7H5 531 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 TCERG1O14776 1098 aaKnown RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 SLC4A10Q6U841 1118 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 TERF2IPQ9NYB0 399 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 GOLGA6L19H0YKK7 550 aa6.86□□□□□ -1.31
SCN1A-209ENST00000635750 CPLX2Q6PUV4 134 aaKnown RBP6.86□□□□□ -1.31
SCN1A-209ENST00000635750 MIER1Q8N108 512 aa6.85□□□□□ -1.31
SCN1A-209ENST00000635750 DHX16O60231 1041 aaKnown RBP6.85□□□□□ -1.31
SCN1A-209ENST00000635750 KTN1Q86UP2 1357 aaKnown RBP6.85□□□□□ -1.31
SCN1A-209ENST00000635750 ST18O60284 1047 aa6.85□□□□□ -1.31
SCN1A-209ENST00000635750 GOLGA3Q08378 1498 aa6.84□□□□□ -1.31
SCN1A-209ENST00000635750 SMC4Q9NTJ3 1288 aa6.84□□□□□ -1.31
SCN1A-209ENST00000635750 CCAR2Q8N163 923 aaKnown RBP6.84□□□□□ -1.31
SCN1A-209ENST00000635750 KIF27Q86VH2 1401 aa6.84□□□□□ -1.32
SCN1A-209ENST00000635750 CDR1P51861 262 aa6.83□□□□□ -1.32
SCN1A-209ENST00000635750 RBM33Q96EV2 1170 aaKnown RBP6.83□□□□□ -1.32
SCN1A-209ENST00000635750 ERICH2A1L162 156 aa6.83□□□□□ -1.32
SCN1A-209ENST00000635750 DCAF1Q9Y4B6 1507 aa6.83□□□□□ -1.32
SCN1A-209ENST00000635750 ATP6V1DQ9Y5K8 247 aa6.83□□□□□ -1.32
SCN1A-209ENST00000635750 EPS15P42566 896 aa6.83□□□□□ -1.32
SCN1A-209ENST00000635750 LTV1Q96GA3 475 aaPredicted RBP6.83□□□□□ -1.32
SCN1A-209ENST00000635750 NEXNQ0ZGT2 675 aa6.82□□□□□ -1.32
SCN1A-209ENST00000635750 TTC5Q8N0Z6 440 aa6.82□□□□□ -1.32
SCN1A-209ENST00000635750 TMEM132AQ24JP5 1023 aa6.82□□□□□ -1.32
SCN1A-209ENST00000635750 ARID3AQ99856 593 aa6.82□□□□□ -1.32
SCN1A-209ENST00000635750 GZF1Q9H116 711 aaPredicted RBP6.82□□□□□ -1.32
SCN1A-209ENST00000635750 BECN2A8MW95 431 aa6.82□□□□□ -1.32
SCN1A-209ENST00000635750 APPP05067 770 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 TRDNQ13061 729 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 FHAD1B1AJZ9 1412 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 ROCK2O75116 1388 aaKnown RBP6.81□□□□□ -1.32
SCN1A-209ENST00000635750 ZFYVE27Q5T4F4 411 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 SYTL4Q96C24 671 aaPredicted RBP6.81□□□□□ -1.32
SCN1A-209ENST00000635750 EEA1Q15075 1411 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 SF3B2Q13435 895 aaKnown RBP6.81□□□□□ -1.32
SCN1A-209ENST00000635750 HSP90AB2PQ58FF8 381 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 MYO6Q9UM54 1294 aa6.81□□□□□ -1.32
SCN1A-209ENST00000635750 BAZ1BQ9UIG0 1483 aaKnown RBP6.8□□□□□ -1.32
SCN1A-209ENST00000635750 CCDC173Q0VFZ6 552 aa6.8□□□□□ -1.32
SCN1A-209ENST00000635750 MCTP1Q6DN14 999 aa6.8□□□□□ -1.32
SCN1A-209ENST00000635750 SAMD1Q6SPF0 538 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-209ENST00000635750 RUFY1Q96T51 708 aa6.8□□□□□ -1.32
SCN1A-209ENST00000635750 ZRSR2Q15696 482 aaKnown RBP6.8□□□□□ -1.32
SCN1A-209ENST00000635750 AK7Q96M32 723 aa6.8□□□□□ -1.32
SCN1A-209ENST00000635750 CARMIL2Q6F5E8 1435 aa6.8□□□□□ -1.32
SCN1A-209ENST00000635750 NOL8Q76FK4 1167 aaKnown RBP6.8□□□□□ -1.32
SCN1A-209ENST00000635750 MFAP1P55081 439 aaKnown RBP6.8□□□□□ -1.32
SCN1A-209ENST00000635750 NAP1L1P55209 391 aaKnown RBP6.8□□□□□ -1.32
SCN1A-209ENST00000635750 RUFY2Q8WXA3 655 aa6.79□□□□□ -1.32
SCN1A-209ENST00000635750 GOLGA6L3A6NEY3 463 aa6.79□□□□□ -1.32
SCN1A-209ENST00000635750 RILPL2Q969X0 211 aa6.79□□□□□ -1.32
SCN1A-209ENST00000635750 NFXL1Q6ZNB6 911 aa6.79□□□□□ -1.32
SCN1A-209ENST00000635750 CPLX1O14810 134 aa6.78□□□□□ -1.32
SCN1A-209ENST00000635750 TEFQ10587 303 aa6.78□□□□□ -1.32
SCN1A-209ENST00000635750 C9orf78Q9NZ63 289 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-209ENST00000635750 IKQ13123 557 aaPredicted RBP6.78□□□□□ -1.32
SCN1A-209ENST00000635750 TEX35Q5T0J7 233 aa6.78□□□□□ -1.32
SCN1A-209ENST00000635750 BRMS1Q9HCU9 246 aa6.78□□□□□ -1.32
SCN1A-209ENST00000635750 DDX58O95786 925 aaKnown RBP6.78□□□□□ -1.32
SCN1A-209ENST00000635750 SAFBQ15424 915 aaKnown RBP eCLIP6.77□□□□□ -1.32
SCN1A-209ENST00000635750 RALBP1Q15311 655 aa6.77□□□□□ -1.33
SCN1A-209ENST00000635750 DIAPH3Q9NSV4 1193 aa6.77□□□□□ -1.33
SCN1A-209ENST00000635750 SLKQ9H2G2 1235 aaPredicted RBP6.77□□□□□ -1.33
SCN1A-209ENST00000635750 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.77□□□□□ -1.33
SCN1A-209ENST00000635750 DCTN1Q14203 1278 aa6.77□□□□□ -1.33
SCN1A-209ENST00000635750 NGEFQ8N5V2 710 aa6.77□□□□□ -1.33
SCN1A-209ENST00000635750 OFD1O75665 1012 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 WASHC2CQ9Y4E1 1318 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 XBP1P17861 261 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 RCAN3Q9UKA8 241 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 ACBD3Q9H3P7 528 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 KAT6BQ8WYB5 2073 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 ZKSCAN1P17029 563 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-209ENST00000635750 RNF20Q5VTR2 975 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 DDX11L8A8MPP1 907 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 SYCP1Q15431 976 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 EFCAB2Q5VUJ9 269 aa6.76□□□□□ -1.33
SCN1A-209ENST00000635750 CCDC97Q96F63 343 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-209ENST00000635750 PSME1Q06323 249 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 ANKRD18AQ8IVF6 992 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 CEP164Q9UPV0 1460 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 VSIG10Q8N0Z9 540 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 MAP7D2Q96T17 732 aa6.75□□□□□ -1.33
SCN1A-209ENST00000635750 CEP162Q5TB80 1403 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms