RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 ATF3P18847 181 aa11.81□□□□□ -0.52
GGA3-223ENST00000621870 CUX1P39880 1505 aa11.8□□□□□ -0.52
GGA3-223ENST00000621870 CASKIN1Q8WXD9 1431 aa11.8□□□□□ -0.52
GGA3-223ENST00000621870 ARAP1Q96P48 1450 aa11.8□□□□□ -0.52
GGA3-223ENST00000621870 BECN1Q14457 450 aa11.8□□□□□ -0.52
GGA3-223ENST00000621870 ARHGAP5Q13017 1502 aa11.8□□□□□ -0.52
GGA3-223ENST00000621870 NCOA2Q15596 1464 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 SLC4A10Q6U841 1118 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 NAP1L2Q9ULW6 460 aaPredicted RBP11.79□□□□□ -0.52
GGA3-223ENST00000621870 USP47Q96K76 1375 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 CGNL1Q0VF96 1302 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 CFAP70Q5T0N1 1121 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 LRRC9Q6ZRR7 1453 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 NUTM2GQ5VZR2 741 aa11.79□□□□□ -0.52
GGA3-223ENST00000621870 CENPJQ9HC77 1338 aaPredicted RBP11.78□□□□□ -0.52
GGA3-223ENST00000621870 CHMP3Q9Y3E7 222 aa11.78□□□□□ -0.52
GGA3-223ENST00000621870 KIF21BO75037 1637 aa11.78□□□□□ -0.52
GGA3-223ENST00000621870 GTF2E1P29083 439 aaPredicted RBP11.78□□□□□ -0.52
GGA3-223ENST00000621870 SMC4Q9NTJ3 1288 aa11.78□□□□□ -0.52
GGA3-223ENST00000621870 ITPRIPQ8IWB1 547 aa11.77□□□□□ -0.52
GGA3-223ENST00000621870 RCAN3Q9UKA8 241 aa11.77□□□□□ -0.52
GGA3-223ENST00000621870 PROSER2Q86WR7 435 aaPredicted RBP11.76□□□□□ -0.53
GGA3-223ENST00000621870 CHMP4AQ9BY43 222 aa11.76□□□□□ -0.53
GGA3-223ENST00000621870 SLC26A8Q96RN1 970 aa11.76□□□□□ -0.53
GGA3-223ENST00000621870 TEFQ10587 303 aa11.76□□□□□ -0.53
GGA3-223ENST00000621870 SYTL4Q96C24 671 aaPredicted RBP11.76□□□□□ -0.53
GGA3-223ENST00000621870 PRXQ9BXM0 1461 aa11.75□□□□□ -0.53
GGA3-223ENST00000621870 TULP1O00294 542 aaPredicted RBP11.75□□□□□ -0.53
GGA3-223ENST00000621870 LMOD3Q0VAK6 560 aa11.75□□□□□ -0.53
GGA3-223ENST00000621870 CABP2Q9NPB3 220 aa11.75□□□□□ -0.53
GGA3-223ENST00000621870 ISY1Q9ULR0 285 aaKnown RBP11.74□□□□□ -0.53
GGA3-223ENST00000621870 THEMISQ8N1K5 641 aaPredicted RBP11.74□□□□□ -0.53
GGA3-223ENST00000621870 GGNBP2Q9H3C7 697 aa11.74□□□□□ -0.53
GGA3-223ENST00000621870 NCLP19338 710 aaKnown RBP11.74□□□□□ -0.53
GGA3-223ENST00000621870 NLRP6P59044 892 aa11.74□□□□□ -0.53
GGA3-223ENST00000621870 TAF7LQ5H9L4 462 aa11.74□□□□□ -0.53
GGA3-223ENST00000621870 C1orf141Q5JVX7 400 aa11.74□□□□□ -0.53
GGA3-223ENST00000621870 TROQ12816 1431 aaPredicted RBP11.73□□□□□ -0.53
GGA3-223ENST00000621870 BCL2L13Q9BXK5 485 aa11.73□□□□□ -0.53
GGA3-223ENST00000621870 FYCO1Q9BQS8 1478 aa11.73□□□□□ -0.53
GGA3-223ENST00000621870 USP35Q9P2H5 1018 aa11.73□□□□□ -0.53
GGA3-223ENST00000621870 MSH5O43196 834 aa11.72□□□□□ -0.53
GGA3-223ENST00000621870 GORABQ5T7V8 394 aa11.72□□□□□ -0.53
GGA3-223ENST00000621870 MEX3CQ5U5Q3 659 aaKnown RBP11.72□□□□□ -0.53
GGA3-223ENST00000621870 NGEFQ8N5V2 710 aa11.72□□□□□ -0.53
GGA3-223ENST00000621870 DNMBPQ6XZF7 1577 aa11.72□□□□□ -0.53
GGA3-223ENST00000621870 PRKRIP1Q9H875 184 aaPredicted RBP11.72□□□□□ -0.53
GGA3-223ENST00000621870 KIAA0586Q9BVV6 1533 aa11.72□□□□□ -0.53
GGA3-223ENST00000621870 PMFBP1Q8TBY8 1022 aa11.71□□□□□ -0.53
GGA3-223ENST00000621870 APAF1O14727 1248 aa11.71□□□□□ -0.53
GGA3-223ENST00000621870 DDRGK1Q96HY6 314 aa11.71□□□□□ -0.53
GGA3-223ENST00000621870 TMX4Q9H1E5 349 aaPredicted RBP11.71□□□□□ -0.53
GGA3-223ENST00000621870 STAC3Q96MF2 364 aa11.71□□□□□ -0.54
GGA3-223ENST00000621870 NLRP2Q9NX02 1062 aa11.71□□□□□ -0.54
GGA3-223ENST00000621870 GOLGA6L22H0YM25 854 aa11.7□□□□□ -0.54
GGA3-223ENST00000621870 ESCO1Q5FWF5 840 aa11.7□□□□□ -0.54
GGA3-223ENST00000621870 MYBBP1AQ9BQG0 1328 aaKnown RBP11.7□□□□□ -0.54
GGA3-223ENST00000621870 DIAPH1O60610 1272 aaKnown RBP11.7□□□□□ -0.54
GGA3-223ENST00000621870 NBPF1Q3BBV0 1214 aa11.7□□□□□ -0.54
GGA3-223ENST00000621870 TOP2BQ02880 1626 aa11.69□□□□□ -0.54
GGA3-223ENST00000621870 TCERG1O14776 1098 aaKnown RBP11.69□□□□□ -0.54
GGA3-223ENST00000621870 EIF5BO60841 1220 aaKnown RBP11.69□□□□□ -0.54
GGA3-223ENST00000621870 PRAM1Q96QH2 718 aa11.69□□□□□ -0.54
GGA3-223ENST00000621870 SLC52A1Q9NWF4 448 aa11.69□□□□□ -0.54
GGA3-223ENST00000621870 ERICH3Q5RHP9 1530 aa11.69□□□□□ -0.54
GGA3-223ENST00000621870 EIF2S2P20042 333 aaKnown RBP11.69□□□□□ -0.54
GGA3-223ENST00000621870 C9orf84Q5VXU9 1444 aa11.68□□□□□ -0.54
GGA3-223ENST00000621870 RAPGEF4Q8WZA2 1011 aa11.68□□□□□ -0.54
GGA3-223ENST00000621870 NECTIN2Q92692 538 aa11.68□□□□□ -0.54
GGA3-223ENST00000621870 LAMC3Q9Y6N6 1575 aa11.68□□□□□ -0.54
GGA3-223ENST00000621870 HMOX1P09601 288 aa11.68□□□□□ -0.54
GGA3-223ENST00000621870 ZRSR1Q15695 479 aaKnown RBP11.68□□□□□ -0.54
GGA3-223ENST00000621870 TTC5Q8N0Z6 440 aa11.68□□□□□ -0.54
GGA3-223ENST00000621870 ZNF608Q9ULD9 1512 aaPredicted RBP11.67□□□□□ -0.54
GGA3-223ENST00000621870 ANKLE2Q86XL3 938 aa11.67□□□□□ -0.54
GGA3-223ENST00000621870 ABTB2Q8N961 1025 aa11.67□□□□□ -0.54
GGA3-223ENST00000621870 ABCA10Q8WWZ4 1543 aa11.66□□□□□ -0.54
GGA3-223ENST00000621870 FRAT2O75474 233 aaPredicted RBP11.66□□□□□ -0.54
GGA3-223ENST00000621870 RWDD1Q9H446 243 aaPredicted RBP11.66□□□□□ -0.54
GGA3-223ENST00000621870 HDAC5Q9UQL6 1122 aa11.66□□□□□ -0.54
GGA3-223ENST00000621870 G3V3G9 751 aa11.66□□□□□ -0.54
GGA3-223ENST00000621870 DCAF8Q5TAQ9 597 aa11.66□□□□□ -0.54
GGA3-223ENST00000621870 KIAA1211Q6ZU35 1233 aa11.66□□□□□ -0.54
GGA3-223ENST00000621870 TSHZ2Q9NRE2 1034 aa11.66□□□□□ -0.54
GGA3-223ENST00000621870 CD109Q6YHK3 1445 aa11.65□□□□□ -0.54
GGA3-223ENST00000621870 HSP90AB1P08238 724 aaKnown RBP11.65□□□□□ -0.54
GGA3-223ENST00000621870 CDK11BP21127 795 aaKnown RBP11.65□□□□□ -0.54
GGA3-223ENST00000621870 PLB1Q6P1J6 1458 aa11.65□□□□□ -0.54
GGA3-223ENST00000621870 HMMRO75330 724 aa11.64□□□□□ -0.55
GGA3-223ENST00000621870 CEBPAP49715 358 aaPredicted RBP11.64□□□□□ -0.55
GGA3-223ENST00000621870 RIPK4P57078 832 aa11.64□□□□□ -0.55
GGA3-223ENST00000621870 PDE3BQ13370 1112 aa11.64□□□□□ -0.55
GGA3-223ENST00000621870 PHF23Q9BUL5 403 aaPredicted RBP11.64□□□□□ -0.55
GGA3-223ENST00000621870 SLC12A5Q9H2X9 1139 aa11.64□□□□□ -0.55
GGA3-223ENST00000621870 KIF7Q2M1P5 1343 aa11.63□□□□□ -0.55
GGA3-223ENST00000621870 CDK13Q14004 1512 aaKnown RBP11.63□□□□□ -0.55
GGA3-223ENST00000621870 GPRASP1Q5JY77 1395 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 TRIM6-TRIM34B2RNG4 842 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 MCCP23508 829 aa11.62□□□□□ -0.55
GGA3-223ENST00000621870 MTHFSP49914 203 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms