RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 EXOC6Q8TAG9 804 aa26.18■■□□□ 1.78
PDLIM3-212ENST00000620787 KDM2AQ9Y2K7 1162 aa26.17■■□□□ 1.78
PDLIM3-212ENST00000620787 TRPM1Q7Z4N2 1603 aa26.16■■□□□ 1.78
PDLIM3-212ENST00000620787 RCAN3Q9UKA8 241 aa26.15■■□□□ 1.78
PDLIM3-212ENST00000620787 PARD3Q8TEW0 1356 aa26.15■■□□□ 1.78
PDLIM3-212ENST00000620787 DCAF11Q8TEB1 546 aa26.14■■□□□ 1.77
PDLIM3-212ENST00000620787 TCERG1O14776 1098 aaKnown RBP26.12■■□□□ 1.77
PDLIM3-212ENST00000620787 ABCA8O94911 1581 aa26.12■■□□□ 1.77
PDLIM3-212ENST00000620787 NLRP13Q86W25 1043 aa26.11■■□□□ 1.77
PDLIM3-212ENST00000620787 MAGI1Q96QZ7 1491 aaPredicted RBP26.11■■□□□ 1.77
PDLIM3-212ENST00000620787 ARHGEF5Q12774 1597 aa26.1■■□□□ 1.77
PDLIM3-212ENST00000620787 PDE3BQ13370 1112 aa26.1■■□□□ 1.77
PDLIM3-212ENST00000620787 RTL5Q5HYW3 569 aaPredicted RBP26.09■■□□□ 1.77
PDLIM3-212ENST00000620787 CARMIL2Q6F5E8 1435 aa26.08■■□□□ 1.77
PDLIM3-212ENST00000620787 PRAG1Q86YV5 1406 aa26.07■■□□□ 1.76
PDLIM3-212ENST00000620787 SYNJ2O15056 1496 aa26.06■■□□□ 1.76
PDLIM3-212ENST00000620787 FAM135AQ9P2D6 1515 aa26.06■■□□□ 1.76
PDLIM3-212ENST00000620787 SALL2Q9Y467 1007 aaPredicted RBP26.05■■□□□ 1.76
PDLIM3-212ENST00000620787 TSPY4P0CV99 314 aa26.05■■□□□ 1.76
PDLIM3-212ENST00000620787 TSPY10P0CW01 314 aa26.05■■□□□ 1.76
PDLIM3-212ENST00000620787 PDE4AP27815 886 aa26.05■■□□□ 1.76
PDLIM3-212ENST00000620787 ATP10BO94823 1461 aa26.04■■□□□ 1.76
PDLIM3-212ENST00000620787 PLEKHD1A6NEE1 506 aa26.04■■□□□ 1.76
PDLIM3-212ENST00000620787 PER1O15534 1290 aaPredicted RBP26.03■■□□□ 1.76
PDLIM3-212ENST00000620787 LAMC1P11047 1609 aa26.03■■□□□ 1.76
PDLIM3-212ENST00000620787 MS4A1P11836 297 aa26.03■■□□□ 1.76
PDLIM3-212ENST00000620787 BACH2Q9BYV9 841 aa26.03■■□□□ 1.76
PDLIM3-212ENST00000620787 NPM2Q86SE8 214 aaKnown RBP26.02■■□□□ 1.76
PDLIM3-212ENST00000620787 COL17A1Q9UMD9 1497 aaPredicted RBP26.01■■□□□ 1.76
PDLIM3-212ENST00000620787 ZMYM4Q5VZL5 1548 aa26.01■■□□□ 1.75
PDLIM3-212ENST00000620787 BLMP54132 1417 aaPredicted RBP26.01■■□□□ 1.75
PDLIM3-212ENST00000620787 CHMP7Q8WUX9 453 aaPredicted RBP26■■□□□ 1.75
PDLIM3-212ENST00000620787 NUP160Q12769 1436 aa26■■□□□ 1.75
PDLIM3-212ENST00000620787 CDCA7LQ96GN5 454 aa26■■□□□ 1.75
PDLIM3-212ENST00000620787 INSRP06213 1382 aa26■■□□□ 1.75
PDLIM3-212ENST00000620787 GPRASP1Q5JY77 1395 aa25.99■■□□□ 1.75
PDLIM3-212ENST00000620787 JPH4Q96JJ6 628 aa25.99■■□□□ 1.75
PDLIM3-212ENST00000620787 HNRNPMP52272 730 aaKnown RBP eCLIP25.98■■□□□ 1.75
PDLIM3-212ENST00000620787 PRDM15P57071 1507 aaPredicted RBP25.98■■□□□ 1.75
PDLIM3-212ENST00000620787 SAMD9LQ8IVG5 1584 aa25.97■■□□□ 1.75
PDLIM3-212ENST00000620787 MYO5CQ9NQX4 1742 aa25.97■■□□□ 1.75
PDLIM3-212ENST00000620787 CDC42BPBQ9Y5S2 1711 aa25.96■■□□□ 1.75
PDLIM3-212ENST00000620787 CCDC144AA2RUR9 1427 aa25.96■■□□□ 1.75
PDLIM3-212ENST00000620787 CCDC141Q6ZP82 1450 aa25.96■■□□□ 1.75
PDLIM3-212ENST00000620787 NBPF1Q3BBV0 1214 aa25.95■■□□□ 1.74
PDLIM3-212ENST00000620787 A2MP01023 1474 aa25.95■■□□□ 1.74
PDLIM3-212ENST00000620787 WASHC2CQ9Y4E1 1318 aa25.94■■□□□ 1.74
PDLIM3-212ENST00000620787 UNC13BO14795 1591 aa25.94■■□□□ 1.74
PDLIM3-212ENST00000620787 PREX2Q70Z35 1606 aa25.93■■□□□ 1.74
PDLIM3-212ENST00000620787 DISP3Q9P2K9 1392 aa25.93■■□□□ 1.74
PDLIM3-212ENST00000620787 PLA2R1Q13018 1463 aa25.92■■□□□ 1.74
PDLIM3-212ENST00000620787 PLEKHH2Q8IVE3 1493 aa25.91■■□□□ 1.74
PDLIM3-212ENST00000620787 PLIN1O60240 522 aa25.91■■□□□ 1.74
PDLIM3-212ENST00000620787 TESK2Q96S53 571 aa25.91■■□□□ 1.74
PDLIM3-212ENST00000620787 EIF2AK4Q9P2K8 1649 aaKnown RBP25.89■■□□□ 1.74
PDLIM3-212ENST00000620787 CC2D1BQ5T0F9 858 aaKnown RBP25.89■■□□□ 1.74
PDLIM3-212ENST00000620787 FBLN2P98095 1184 aa25.88■■□□□ 1.73
PDLIM3-212ENST00000620787 CRBNQ96SW2 442 aa25.88■■□□□ 1.73
PDLIM3-212ENST00000620787 LAS1LQ9Y4W2 734 aaKnown RBP25.88■■□□□ 1.73
PDLIM3-212ENST00000620787 ERBINQ96RT1 1412 aa25.87■■□□□ 1.73
PDLIM3-212ENST00000620787 RGL3Q3MIN7 710 aa25.87■■□□□ 1.73
PDLIM3-212ENST00000620787 USP35Q9P2H5 1018 aa25.86■■□□□ 1.73
PDLIM3-212ENST00000620787 MAST1Q9Y2H9 1570 aa25.85■■□□□ 1.73
PDLIM3-212ENST00000620787 PANK3Q9H999 370 aa25.85■■□□□ 1.73
PDLIM3-212ENST00000620787 IQGAP3Q86VI3 1631 aa25.85■■□□□ 1.73
PDLIM3-212ENST00000620787 NEFMP07197 916 aa25.84■■□□□ 1.73
PDLIM3-212ENST00000620787 RNF17Q9BXT8 1623 aaKnown RBP25.82■■□□□ 1.72
PDLIM3-212ENST00000620787 SKAP1Q86WV1 359 aa25.82■■□□□ 1.72
PDLIM3-212ENST00000620787 SYCP2Q9BX26 1530 aa25.81■■□□□ 1.72
PDLIM3-212ENST00000620787 PPM1GO15355 546 aaPredicted RBP25.8■■□□□ 1.72
PDLIM3-212ENST00000620787 RSPH4AQ5TD94 716 aa25.8■■□□□ 1.72
PDLIM3-212ENST00000620787 PLXNC1O60486 1568 aa25.77■■□□□ 1.72
PDLIM3-212ENST00000620787 C20orf194Q5TEA3 1177 aa25.77■■□□□ 1.72
PDLIM3-212ENST00000620787 KDM2BQ8NHM5 1336 aa25.77■■□□□ 1.72
PDLIM3-212ENST00000620787 TMF1P82094 1093 aa25.76■■□□□ 1.71
PDLIM3-212ENST00000620787 ERCC6Q03468 1493 aa25.76■■□□□ 1.71
PDLIM3-212ENST00000620787 DDRGK1Q96HY6 314 aa25.76■■□□□ 1.71
PDLIM3-212ENST00000620787 ATP10AO60312 1499 aa25.75■■□□□ 1.71
PDLIM3-212ENST00000620787 ADAMTS8Q9UP79 889 aa25.74■■□□□ 1.71
PDLIM3-212ENST00000620787 TTC37Q6PGP7 1564 aa25.73■■□□□ 1.71
PDLIM3-212ENST00000620787 WDR7Q9Y4E6 1490 aa25.72■■□□□ 1.71
PDLIM3-212ENST00000620787 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.72■■□□□ 1.71
PDLIM3-212ENST00000620787 MAGI2Q86UL8 1455 aa25.71■■□□□ 1.71
PDLIM3-212ENST00000620787 PLEKHH1Q9ULM0 1364 aa25.71■■□□□ 1.71
PDLIM3-212ENST00000620787 IL27Q8NEV9 243 aa25.71■■□□□ 1.71
PDLIM3-212ENST00000620787 IQGAP1P46940 1657 aa25.7■■□□□ 1.71
PDLIM3-212ENST00000620787 ARHGAP5Q13017 1502 aa25.7■■□□□ 1.7
PDLIM3-212ENST00000620787 DUSP27Q5VZP5 1158 aa25.68■■□□□ 1.7
PDLIM3-212ENST00000620787 CLASP1Q7Z460 1538 aa25.67■■□□□ 1.7
PDLIM3-212ENST00000620787 CENPQQ7L2Z9 268 aaPredicted RBP25.67■■□□□ 1.7
PDLIM3-212ENST00000620787 ZNF521Q96K83 1311 aa25.67■■□□□ 1.7
PDLIM3-212ENST00000620787 MADDQ8WXG6 1647 aa25.66■■□□□ 1.7
PDLIM3-212ENST00000620787 PPP2R1AP30153 589 aa25.66■■□□□ 1.7
PDLIM3-212ENST00000620787 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP25.66■■□□□ 1.7
PDLIM3-212ENST00000620787 DUOX2Q9NRD8 1548 aa25.66■■□□□ 1.7
PDLIM3-212ENST00000620787 SYNMO15061 1565 aa25.64■■□□□ 1.7
PDLIM3-212ENST00000620787 WDR43Q15061 677 aaKnown RBP eCLIP25.61■■□□□ 1.69
PDLIM3-212ENST00000620787 AMER1Q5JTC6 1135 aaPredicted RBP25.61■■□□□ 1.69
PDLIM3-212ENST00000620787 MYOM1P52179 1685 aa25.6■■□□□ 1.69
PDLIM3-212ENST00000620787 C8orf34Q49A92 452 aa25.6■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms