RNA–Protein interactions for RNA: ENST00000618534.4

NEK3-208, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene NEK3, Length 2,414 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-208ENST00000618534 MYBBP1AQ9BQG0 1328 aaKnown RBP27.46■■□□□ 1.99
NEK3-208ENST00000618534 TSPY4P0CV99 314 aa27.46■■□□□ 1.99
NEK3-208ENST00000618534 TSPY10P0CW01 314 aa27.46■■□□□ 1.99
NEK3-208ENST00000618534 NOP58Q9Y2X3 529 aaKnown RBP27.43■■□□□ 1.98
NEK3-208ENST00000618534 RALBP1Q15311 655 aa27.42■■□□□ 1.98
NEK3-208ENST00000618534 KTN1Q86UP2 1357 aaKnown RBP27.42■■□□□ 1.98
NEK3-208ENST00000618534 HNRNPMP52272 730 aaKnown RBP eCLIP27.42■■□□□ 1.98
NEK3-208ENST00000618534 ARHGEF5Q12774 1597 aa27.4■■□□□ 1.98
NEK3-208ENST00000618534 ERCC6Q03468 1493 aa27.38■■□□□ 1.97
NEK3-208ENST00000618534 PAK3O75914 559 aaPredicted RBP27.38■■□□□ 1.97
NEK3-208ENST00000618534 FAM135AQ9P2D6 1515 aa27.36■■□□□ 1.97
NEK3-208ENST00000618534 MYT1LQ9UL68 1186 aa27.36■■□□□ 1.97
NEK3-208ENST00000618534 TRPM1Q7Z4N2 1603 aa27.35■■□□□ 1.97
NEK3-208ENST00000618534 PRAG1Q86YV5 1406 aa27.33■■□□□ 1.97
NEK3-208ENST00000618534 RRP1P56182 461 aaKnown RBP27.32■■□□□ 1.96
NEK3-208ENST00000618534 SAMD9LQ8IVG5 1584 aa27.32■■□□□ 1.96
NEK3-208ENST00000618534 CCDC141Q6ZP82 1450 aa27.32■■□□□ 1.96
NEK3-208ENST00000618534 PARD3Q8TEW0 1356 aa27.31■■□□□ 1.96
NEK3-208ENST00000618534 ANP32AP39687 249 aaKnown RBP27.3■■□□□ 1.96
NEK3-208ENST00000618534 NLRP13Q86W25 1043 aa27.3■■□□□ 1.96
NEK3-208ENST00000618534 CCDC144AA2RUR9 1427 aa27.28■■□□□ 1.96
NEK3-208ENST00000618534 SALL2Q9Y467 1007 aaPredicted RBP27.28■■□□□ 1.96
NEK3-208ENST00000618534 CDC42BPBQ9Y5S2 1711 aa27.28■■□□□ 1.96
NEK3-208ENST00000618534 IPO9Q96P70 1041 aaKnown RBP27.27■■□□□ 1.96
NEK3-208ENST00000618534 PREX2Q70Z35 1606 aa27.27■■□□□ 1.96
NEK3-208ENST00000618534 EXOC6Q8TAG9 804 aa27.27■■□□□ 1.96
NEK3-208ENST00000618534 RCAN3Q9UKA8 241 aa27.27■■□□□ 1.96
NEK3-208ENST00000618534 NBPF1Q3BBV0 1214 aa27.26■■□□□ 1.95
NEK3-208ENST00000618534 DEKP35659 375 aaKnown RBP27.25■■□□□ 1.95
NEK3-208ENST00000618534 NBR1Q14596 966 aa27.25■■□□□ 1.95
NEK3-208ENST00000618534 RGL3Q3MIN7 710 aa27.24■■□□□ 1.95
NEK3-208ENST00000618534 PER1O15534 1290 aaPredicted RBP27.22■■□□□ 1.95
NEK3-208ENST00000618534 PLA2R1Q13018 1463 aa27.22■■□□□ 1.95
NEK3-208ENST00000618534 A2MP01023 1474 aa27.21■■□□□ 1.95
NEK3-208ENST00000618534 COL17A1Q9UMD9 1497 aaPredicted RBP27.21■■□□□ 1.95
NEK3-208ENST00000618534 GPRASP1Q5JY77 1395 aa27.21■■□□□ 1.95
NEK3-208ENST00000618534 UNC13BO14795 1591 aa27.2■■□□□ 1.94
NEK3-208ENST00000618534 PDE3BQ13370 1112 aa27.19■■□□□ 1.94
NEK3-208ENST00000618534 SYCP2Q9BX26 1530 aa27.19■■□□□ 1.94
NEK3-208ENST00000618534 DISP3Q9P2K9 1392 aa27.18■■□□□ 1.94
NEK3-208ENST00000618534 PRDM15P57071 1507 aaPredicted RBP27.17■■□□□ 1.94
NEK3-208ENST00000618534 LAMC1P11047 1609 aa27.17■■□□□ 1.94
NEK3-208ENST00000618534 RSPH4AQ5TD94 716 aa27.17■■□□□ 1.94
NEK3-208ENST00000618534 CDCA7LQ96GN5 454 aa27.16■■□□□ 1.94
NEK3-208ENST00000618534 ZBTB47Q9UFB7 747 aaPredicted RBP27.16■■□□□ 1.94
NEK3-208ENST00000618534 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.15■■□□□ 1.947e-6■■■□□ 15
NEK3-208ENST00000618534 CC2D1BQ5T0F9 858 aaKnown RBP27.15■■□□□ 1.94
NEK3-208ENST00000618534 TESK2Q96S53 571 aa27.15■■□□□ 1.94
NEK3-208ENST00000618534 MYO5CQ9NQX4 1742 aa27.14■■□□□ 1.94
NEK3-208ENST00000618534 MAST1Q9Y2H9 1570 aa27.14■■□□□ 1.93
NEK3-208ENST00000618534 TCERG1O14776 1098 aaKnown RBP27.11■■□□□ 1.93
NEK3-208ENST00000618534 TTC37Q6PGP7 1564 aa27.11■■□□□ 1.93
NEK3-208ENST00000618534 BLMP54132 1417 aaPredicted RBP27.11■■□□□ 1.93
NEK3-208ENST00000618534 ARHGAP5Q13017 1502 aa27.11■■□□□ 1.93
NEK3-208ENST00000618534 ERBINQ96RT1 1412 aa27.11■■□□□ 1.93
NEK3-208ENST00000618534 IQGAP3Q86VI3 1631 aa27.1■■□□□ 1.93
NEK3-208ENST00000618534 WASHC2CQ9Y4E1 1318 aa27.1■■□□□ 1.93
NEK3-208ENST00000618534 PANK3Q9H999 370 aa27.09■■□□□ 1.93
NEK3-208ENST00000618534 EIF2AK4Q9P2K8 1649 aaKnown RBP27.09■■□□□ 1.93
NEK3-208ENST00000618534 PLEKHH2Q8IVE3 1493 aa27.07■■□□□ 1.92
NEK3-208ENST00000618534 NPM2Q86SE8 214 aaKnown RBP27.06■■□□□ 1.92
NEK3-208ENST00000618534 INSRP06213 1382 aa27.06■■□□□ 1.92
NEK3-208ENST00000618534 PLXNC1O60486 1568 aa27.06■■□□□ 1.92
NEK3-208ENST00000618534 ZMYM4Q5VZL5 1548 aa27.06■■□□□ 1.92
NEK3-208ENST00000618534 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.05■■□□□ 1.92
NEK3-208ENST00000618534 PLIN1O60240 522 aa27.05■■□□□ 1.92
NEK3-208ENST00000618534 PDE4AP27815 886 aa27.05■■□□□ 1.92
NEK3-208ENST00000618534 TMF1P82094 1093 aa27.02■■□□□ 1.92
NEK3-208ENST00000618534 BACH2Q9BYV9 841 aa27■■□□□ 1.91
NEK3-208ENST00000618534 ATP10AO60312 1499 aa27■■□□□ 1.91
NEK3-208ENST00000618534 RNF17Q9BXT8 1623 aaKnown RBP27■■□□□ 1.91
NEK3-208ENST00000618534 MS4A1P11836 297 aa26.99■■□□□ 1.91
NEK3-208ENST00000618534 RTL5Q5HYW3 569 aaPredicted RBP26.99■■□□□ 1.91
NEK3-208ENST00000618534 MAGI2Q86UL8 1455 aa26.98■■□□□ 1.91
NEK3-208ENST00000618534 CRBNQ96SW2 442 aa26.98■■□□□ 1.91
NEK3-208ENST00000618534 DUOX2Q9NRD8 1548 aa26.98■■□□□ 1.91
NEK3-208ENST00000618534 ADAMTS8Q9UP79 889 aa26.92■■□□□ 1.9
NEK3-208ENST00000618534 SKAP1Q86WV1 359 aa26.92■■□□□ 1.9
NEK3-208ENST00000618534 WDR7Q9Y4E6 1490 aa26.91■■□□□ 1.9
NEK3-208ENST00000618534 C20orf194Q5TEA3 1177 aa26.88■■□□□ 1.89
NEK3-208ENST00000618534 MADDQ8WXG6 1647 aa26.88■■□□□ 1.89
NEK3-208ENST00000618534 CHD1O14646 1710 aa26.87■■□□□ 1.89
NEK3-208ENST00000618534 IQGAP1P46940 1657 aa26.87■■□□□ 1.89
NEK3-208ENST00000618534 PLEKHH1Q9ULM0 1364 aa26.86■■□□□ 1.89
NEK3-208ENST00000618534 PPP2R1AP30153 589 aa26.86■■□□□ 1.89
NEK3-208ENST00000618534 ABCC2Q92887 1545 aa26.85■■□□□ 1.89
NEK3-208ENST00000618534 KNSTRNQ9Y448 316 aa26.85■■□□□ 1.89
NEK3-208ENST00000618534 LAS1LQ9Y4W2 734 aaKnown RBP26.84■■□□□ 1.89
NEK3-208ENST00000618534 SHROOM2Q13796 1616 aa26.84■■□□□ 1.89
NEK3-208ENST00000618534 WDR43Q15061 677 aaKnown RBP eCLIP26.82■■□□□ 1.88
NEK3-208ENST00000618534 AMER1Q5JTC6 1135 aaPredicted RBP26.81■■□□□ 1.88
NEK3-208ENST00000618534 ERCC6L2Q5T890 1561 aa26.81■■□□□ 1.88
NEK3-208ENST00000618534 DUSP27Q5VZP5 1158 aa26.8■■□□□ 1.88
NEK3-208ENST00000618534 SYNMO15061 1565 aa26.8■■□□□ 1.88
NEK3-208ENST00000618534 PLCH2O75038 1416 aa26.79■■□□□ 1.88
NEK3-208ENST00000618534 KDM2BQ8NHM5 1336 aa26.79■■□□□ 1.88
NEK3-208ENST00000618534 SPHKAPQ2M3C7 1700 aa26.78■■□□□ 1.88
NEK3-208ENST00000618534 ABCC1P33527 1531 aa26.78■■□□□ 1.88
NEK3-208ENST00000618534 ZNF521Q96K83 1311 aa26.77■■□□□ 1.88
NEK3-208ENST00000618534 TRAPPC8Q9Y2L5 1435 aa26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 142.6 ms