RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 EIF4G3O43432 1585 aaKnown RBP18.14■□□□□ 0.49
CIITA-213ENST00000618327 CCDC141Q6ZP82 1450 aa18.14■□□□□ 0.49
CIITA-213ENST00000618327 RAPGEF3O95398 923 aa18.14■□□□□ 0.49
CIITA-213ENST00000618327 NLRP13Q86W25 1043 aa18.13■□□□□ 0.49
CIITA-213ENST00000618327 THOC2Q8NI27 1593 aaKnown RBP18.13■□□□□ 0.49
CIITA-213ENST00000618327 PANK3Q9H999 370 aa18.13■□□□□ 0.49
CIITA-213ENST00000618327 UGGT2Q9NYU1 1516 aa18.12■□□□□ 0.49
CIITA-213ENST00000618327 LAS1LQ9Y4W2 734 aaKnown RBP18.12■□□□□ 0.49
CIITA-213ENST00000618327 GLIPR1L2Q4G1C9 344 aa18.12■□□□□ 0.49
CIITA-213ENST00000618327 RAPGEF6Q8TEU7 1601 aa18.1■□□□□ 0.49
CIITA-213ENST00000618327 PRKRIP1Q9H875 184 aaPredicted RBP18.09■□□□□ 0.49
CIITA-213ENST00000618327 NUP153P49790 1475 aaKnown RBP18.08■□□□□ 0.49
CIITA-213ENST00000618327 ABCA5Q8WWZ7 1642 aa18.08■□□□□ 0.48
CIITA-213ENST00000618327 CD109Q6YHK3 1445 aa18.08■□□□□ 0.48
CIITA-213ENST00000618327 AKNAQ7Z591 1439 aa18.07■□□□□ 0.48
CIITA-213ENST00000618327 ATP10BO94823 1461 aa18.07■□□□□ 0.48
CIITA-213ENST00000618327 EVC2Q86UK5 1308 aa18.07■□□□□ 0.48
CIITA-213ENST00000618327 ANP32BQ92688 251 aaKnown RBP18.07■□□□□ 0.48
CIITA-213ENST00000618327 UPF2Q9HAU5 1272 aaKnown RBP18.07■□□□□ 0.48
CIITA-213ENST00000618327 MYH16Q9H6N6 1097 aa18.07■□□□□ 0.48
CIITA-213ENST00000618327 U2AF1L5P0DN76 240 aaPredicted RBP18.06■□□□□ 0.48
CIITA-213ENST00000618327 U2AF1Q01081 240 aaKnown RBP eCLIP18.06■□□□□ 0.48
CIITA-213ENST00000618327 CCDC7Q96M83 1385 aa18.06■□□□□ 0.48
CIITA-213ENST00000618327 KIAA0556O60303 1618 aa18.06■□□□□ 0.48
CIITA-213ENST00000618327 KIF7Q2M1P5 1343 aa18.06■□□□□ 0.48
CIITA-213ENST00000618327 MYBBP1AQ9BQG0 1328 aaKnown RBP18.05■□□□□ 0.48
CIITA-213ENST00000618327 A0A0G2JS52 829 aa18.05■□□□□ 0.48
CIITA-213ENST00000618327 NCOA1Q15788 1441 aa18.05■□□□□ 0.48
CIITA-213ENST00000618327 FTSJ3Q8IY81 847 aaKnown RBP18.05■□□□□ 0.48
CIITA-213ENST00000618327 GPATCH8Q9UKJ3 1502 aaKnown RBP18.04■□□□□ 0.48
CIITA-213ENST00000618327 PAK3O75914 559 aaPredicted RBP18.04■□□□□ 0.48
CIITA-213ENST00000618327 NBPF8Q3BBV2 869 aa18.03■□□□□ 0.48
CIITA-213ENST00000618327 FRAT1Q92837 279 aaPredicted RBP18.03■□□□□ 0.48
CIITA-213ENST00000618327 PPP4R2Q9NY27 417 aa18.03■□□□□ 0.48
CIITA-213ENST00000618327 MINK1Q8N4C8 1332 aaPredicted RBP18.03■□□□□ 0.48
CIITA-213ENST00000618327 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.02■□□□□ 0.48
CIITA-213ENST00000618327 CENPJQ9HC77 1338 aaPredicted RBP18.02■□□□□ 0.48
CIITA-213ENST00000618327 NUP160Q12769 1436 aa18.02■□□□□ 0.48
CIITA-213ENST00000618327 PBRM1Q86U86 1689 aa18.02■□□□□ 0.48
CIITA-213ENST00000618327 NUTM2FA1L443 756 aa18.02■□□□□ 0.47
CIITA-213ENST00000618327 ADGRL1O94910 1474 aa18.02■□□□□ 0.47
CIITA-213ENST00000618327 NGDNQ8NEJ9 315 aaKnown RBP18.01■□□□□ 0.47
CIITA-213ENST00000618327 CFAP70Q5T0N1 1121 aa18■□□□□ 0.47
CIITA-213ENST00000618327 WASHC2AQ641Q2 1341 aa18■□□□□ 0.47
CIITA-213ENST00000618327 NBR1Q14596 966 aa17.99■□□□□ 0.47
CIITA-213ENST00000618327 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.99■□□□□ 0.47
CIITA-213ENST00000618327 NBPF1Q3BBV0 1214 aa17.98■□□□□ 0.47
CIITA-213ENST00000618327 TMEM132EQ6IEE7 984 aa17.98■□□□□ 0.47
CIITA-213ENST00000618327 TARBP1Q13395 1621 aaKnown RBP17.97■□□□□ 0.47
CIITA-213ENST00000618327 CGNL1Q0VF96 1302 aa17.97■□□□□ 0.47
CIITA-213ENST00000618327 ANKRD30BQ9BXX2 1392 aa17.97■□□□□ 0.47
CIITA-213ENST00000618327 FANCAO15360 1455 aa17.95■□□□□ 0.46
CIITA-213ENST00000618327 DISP1Q96F81 1524 aa17.95■□□□□ 0.46
CIITA-213ENST00000618327 SLC52A1Q9NWF4 448 aa17.95■□□□□ 0.46
CIITA-213ENST00000618327 HSP90AA1P07900 732 aaKnown RBP17.95■□□□□ 0.46
CIITA-213ENST00000618327 WDR97A6NE52 1622 aa17.94■□□□□ 0.46
CIITA-213ENST00000618327 MS4A1P11836 297 aa17.94■□□□□ 0.46
CIITA-213ENST00000618327 CNTLNQ9NXG0 1405 aa17.94■□□□□ 0.46
CIITA-213ENST00000618327 PTPRKQ15262 1439 aa17.94■□□□□ 0.46
CIITA-213ENST00000618327 CCDC146Q8IYE0 955 aa17.93■□□□□ 0.46
CIITA-213ENST00000618327 RCAN3Q9UKA8 241 aa17.92■□□□□ 0.46
CIITA-213ENST00000618327 B4GALNT3Q6L9W6 998 aa17.92■□□□□ 0.46
CIITA-213ENST00000618327 RTF1Q92541 710 aaKnown RBP17.92■□□□□ 0.46
CIITA-213ENST00000618327 CFAP43Q8NDM7 1665 aa17.91■□□□□ 0.46
CIITA-213ENST00000618327 PLCH2O75038 1416 aa17.91■□□□□ 0.46
CIITA-213ENST00000618327 GOLGA2Q08379 1002 aa17.9■□□□□ 0.46
CIITA-213ENST00000618327 ASXL2Q76L83 1435 aa17.9■□□□□ 0.46
CIITA-213ENST00000618327 PDE3BQ13370 1112 aa17.89■□□□□ 0.45
CIITA-213ENST00000618327 CALD1Q05682 793 aaKnown RBP17.88■□□□□ 0.45
CIITA-213ENST00000618327 CHMP4BQ9H444 224 aaKnown RBP17.88■□□□□ 0.45
CIITA-213ENST00000618327 ERBINQ96RT1 1412 aa17.87■□□□□ 0.45
CIITA-213ENST00000618327 COG3Q96JB2 828 aa17.87■□□□□ 0.45
CIITA-213ENST00000618327 ITSN2Q9NZM3 1697 aa17.87■□□□□ 0.45
CIITA-213ENST00000618327 SAMD9Q5K651 1589 aa17.86■□□□□ 0.45
CIITA-213ENST00000618327 DENND4BO75064 1496 aaPredicted RBP17.86■□□□□ 0.45
CIITA-213ENST00000618327 RPGRIP1LQ68CZ1 1315 aa17.85■□□□□ 0.45
CIITA-213ENST00000618327 AMPHP49418 695 aa17.85■□□□□ 0.45
CIITA-213ENST00000618327 CABP2Q9NPB3 220 aa17.85■□□□□ 0.45
CIITA-213ENST00000618327 WDR7Q9Y4E6 1490 aa17.84■□□□□ 0.45
CIITA-213ENST00000618327 TCOF1Q13428 1488 aaKnown RBP17.84■□□□□ 0.45
CIITA-213ENST00000618327 TXNDC2Q86VQ3 553 aa17.84■□□□□ 0.45
CIITA-213ENST00000618327 CEP170Q5SW79 1584 aa17.84■□□□□ 0.45
CIITA-213ENST00000618327 ERICH6BQ5W0A0 696 aa17.83■□□□□ 0.44
CIITA-213ENST00000618327 ARXQ96QS3 562 aa17.83■□□□□ 0.44
CIITA-213ENST00000618327 DHX29Q7Z478 1369 aaKnown RBP17.82■□□□□ 0.44
CIITA-213ENST00000618327 ZBED9Q6R2W3 1325 aa17.82■□□□□ 0.44
CIITA-213ENST00000618327 CSB-PGBD3P0DP91 1061 aa17.82■□□□□ 0.44
CIITA-213ENST00000618327 RGS3P49796 1198 aa17.81■□□□□ 0.44
CIITA-213ENST00000618327 ABCC2Q92887 1545 aa17.81■□□□□ 0.44
CIITA-213ENST00000618327 RPRD2Q5VT52 1461 aaKnown RBP17.8■□□□□ 0.44
CIITA-213ENST00000618327 SYCP2Q9BX26 1530 aa17.8■□□□□ 0.44
CIITA-213ENST00000618327 POGZQ7Z3K3 1410 aa17.8■□□□□ 0.44
CIITA-213ENST00000618327 IPO8O15397 1037 aaKnown RBP17.8■□□□□ 0.44
CIITA-213ENST00000618327 RRP7AQ9Y3A4 280 aaKnown RBP17.8■□□□□ 0.44
CIITA-213ENST00000618327 PRAM1Q96QH2 718 aa17.79■□□□□ 0.44
CIITA-213ENST00000618327 THEMISQ8N1K5 641 aaPredicted RBP17.78■□□□□ 0.44
CIITA-213ENST00000618327 LTV1Q96GA3 475 aaPredicted RBP17.78■□□□□ 0.44
CIITA-213ENST00000618327 LMOD3Q0VAK6 560 aa17.77■□□□□ 0.43
CIITA-213ENST00000618327 APAF1O14727 1248 aa17.76■□□□□ 0.43
CIITA-213ENST00000618327 GGNBP2Q9H3C7 697 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms