RNA–Protein interactions for RNA: ENST00000617103.4

CLTCL1-209, Transcript of clathrin heavy chain like 1, humanhuman

TSL 1 (best)

Gene CLTCL1, Length 4,859 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-209ENST00000617103 FAM13BQ9NYF5 915 aa13.21□□□□□ -0.3
CLTCL1-209ENST00000617103 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.2□□□□□ -0.3
CLTCL1-209ENST00000617103 ST20-MTHFSA0A0A6YYL1 179 aa13.2□□□□□ -0.3
CLTCL1-209ENST00000617103 FOXD4L5Q5VV16 416 aaPredicted RBP13.2□□□□□ -0.3
CLTCL1-209ENST00000617103 FOXD4L4Q8WXT5 416 aaPredicted RBP13.2□□□□□ -0.3
CLTCL1-209ENST00000617103 ATP6V1DQ9Y5K8 247 aa13.19□□□□□ -0.3
CLTCL1-209ENST00000617103 EIF4G1Q04637 1599 aaKnown RBP13.19□□□□□ -0.3
CLTCL1-209ENST00000617103 KIF16BQ96L93 1317 aa13.19□□□□□ -0.3
CLTCL1-209ENST00000617103 GPATCH3Q96I76 525 aa13.19□□□□□ -0.3
CLTCL1-209ENST00000617103 HDAC5Q9UQL6 1122 aa13.18□□□□□ -0.3
CLTCL1-209ENST00000617103 ZKSCAN2Q63HK3 967 aa13.18□□□□□ -0.3
CLTCL1-209ENST00000617103 COG6Q9Y2V7 657 aa13.18□□□□□ -0.3
CLTCL1-209ENST00000617103 PANK3Q9H999 370 aa13.17□□□□□ -0.3
CLTCL1-209ENST00000617103 STK26Q9P289 416 aa13.17□□□□□ -0.3
CLTCL1-209ENST00000617103 KIF3AQ9Y496 699 aa13.17□□□□□ -0.3
CLTCL1-209ENST00000617103 ANKRD45Q5TZF3 282 aa13.16□□□□□ -0.3
CLTCL1-209ENST00000617103 ZNF771Q7L3S4 317 aaPredicted RBP13.16□□□□□ -0.3
CLTCL1-209ENST00000617103 NOC3LQ8WTT2 800 aaKnown RBP13.16□□□□□ -0.3
CLTCL1-209ENST00000617103 HSP90B1P14625 803 aaKnown RBP13.16□□□□□ -0.3
CLTCL1-209ENST00000617103 HDGFP51858 240 aaKnown RBP13.16□□□□□ -0.3
CLTCL1-209ENST00000617103 LMOD3Q0VAK6 560 aa13.16□□□□□ -0.3
CLTCL1-209ENST00000617103 SPAG9O60271 1321 aaKnown RBP13.15□□□□□ -0.3
CLTCL1-209ENST00000617103 MRE11P49959 708 aa13.15□□□□□ -0.3
CLTCL1-209ENST00000617103 BCL2L13Q9BXK5 485 aa13.15□□□□□ -0.3
CLTCL1-209ENST00000617103 GOLGA6L19H0YKK7 550 aa13.14□□□□□ -0.31
CLTCL1-209ENST00000617103 SLC4A10Q6U841 1118 aa13.14□□□□□ -0.31
CLTCL1-209ENST00000617103 NGEFQ8N5V2 710 aa13.14□□□□□ -0.31
CLTCL1-209ENST00000617103 TERF2IPQ9NYB0 399 aa13.14□□□□□ -0.31
CLTCL1-209ENST00000617103 MROH2BQ7Z745 1585 aa13.14□□□□□ -0.31
CLTCL1-209ENST00000617103 RRP7AQ9Y3A4 280 aaKnown RBP13.14□□□□□ -0.31
CLTCL1-209ENST00000617103 TPM3P06753 285 aa13.13□□□□□ -0.31
CLTCL1-209ENST00000617103 MAP7D2Q96T17 732 aa13.13□□□□□ -0.31
CLTCL1-209ENST00000617103 BECN2A8MW95 431 aa13.13□□□□□ -0.31
CLTCL1-209ENST00000617103 SF3A1Q15459 793 aaKnown RBP13.12□□□□□ -0.31
CLTCL1-209ENST00000617103 USP47Q96K76 1375 aa13.12□□□□□ -0.31
CLTCL1-209ENST00000617103 MTERF4Q7Z6M4 381 aaKnown RBP13.12□□□□□ -0.31
CLTCL1-209ENST00000617103 REC8O95072 547 aa13.12□□□□□ -0.31
CLTCL1-209ENST00000617103 GPS2Q13227 327 aa13.11□□□□□ -0.31
CLTCL1-209ENST00000617103 DDX19BQ9UMR2 479 aa13.11□□□□□ -0.31
CLTCL1-209ENST00000617103 APAF1O14727 1248 aa13.11□□□□□ -0.31
CLTCL1-209ENST00000617103 NUCB2P80303 420 aa13.11□□□□□ -0.31
CLTCL1-209ENST00000617103 ANO8Q9HCE9 1232 aaPredicted RBP13.11□□□□□ -0.31
CLTCL1-209ENST00000617103 NPHP1O15259 732 aa13.1□□□□□ -0.31
CLTCL1-209ENST00000617103 FOXD4L6Q3SYB3 417 aaPredicted RBP13.1□□□□□ -0.31
CLTCL1-209ENST00000617103 FOXD4L3Q6VB84 417 aaPredicted RBP13.1□□□□□ -0.31
CLTCL1-209ENST00000617103 BRPF3Q9ULD4 1205 aa13.1□□□□□ -0.31
CLTCL1-209ENST00000617103 GGT6Q6P531 493 aa13.1□□□□□ -0.31
CLTCL1-209ENST00000617103 RAPGEF2Q9Y4G8 1499 aa13.1□□□□□ -0.31
CLTCL1-209ENST00000617103 IL27Q8NEV9 243 aa13.09□□□□□ -0.31
CLTCL1-209ENST00000617103 SETQ01105 290 aaPredicted RBP13.09□□□□□ -0.31
CLTCL1-209ENST00000617103 RILPL2Q969X0 211 aa13.09□□□□□ -0.31
CLTCL1-209ENST00000617103 ZNF592Q92610 1267 aa13.08□□□□□ -0.31
CLTCL1-209ENST00000617103 C22orf23Q9BZE7 217 aa13.08□□□□□ -0.31
CLTCL1-209ENST00000617103 H3BQV1 296 aa13.08□□□□□ -0.32
CLTCL1-209ENST00000617103 AAMPQ13685 434 aa13.08□□□□□ -0.32
CLTCL1-209ENST00000617103 IFFO2Q5TF58 517 aa13.08□□□□□ -0.32
CLTCL1-209ENST00000617103 GORABQ5T7V8 394 aa13.08□□□□□ -0.32
CLTCL1-209ENST00000617103 CHMP4CQ96CF2 233 aa13.08□□□□□ -0.32
CLTCL1-209ENST00000617103 A0A0U1RQG5 324 aaPredicted RBP13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 TEX35Q5T0J7 233 aa13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 RSPH4AQ5TD94 716 aa13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 DZIP1LQ8IYY4 767 aaKnown RBP13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 CCAR2Q8N163 923 aaKnown RBP13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 CCDC7Q96M83 1385 aa13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 FHOD3Q2V2M9 1422 aa13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 TPM2P07951 284 aa13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 NASPP49321 788 aaPredicted RBP13.07□□□□□ -0.32
CLTCL1-209ENST00000617103 CCDC18Q5T9S5 1454 aa13.06□□□□□ -0.32
CLTCL1-209ENST00000617103 R3HCC1Q9Y3T6 440 aaKnown RBP13.06□□□□□ -0.32
CLTCL1-209ENST00000617103 PAK3O75914 559 aaPredicted RBP13.06□□□□□ -0.32
CLTCL1-209ENST00000617103 EFCAB2Q5VUJ9 269 aa13.06□□□□□ -0.32
CLTCL1-209ENST00000617103 FAM184AQ8NB25 1140 aa13.06□□□□□ -0.32
CLTCL1-209ENST00000617103 TRAK2O60296 914 aa13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 ELL2O00472 640 aaPredicted RBP13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 CARMIL2Q6F5E8 1435 aa13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 CNTLNQ9NXG0 1405 aa13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 FRAT2O75474 233 aaPredicted RBP13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 DIAPH3Q9NSV4 1193 aa13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 CREBRFQ8IUR6 639 aa13.05□□□□□ -0.32
CLTCL1-209ENST00000617103 CLSTN1O94985 981 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 KIF7Q2M1P5 1343 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 CCDC144AA2RUR9 1427 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 MCTP1Q6DN14 999 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 PKNOX2Q96KN3 472 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 CCDC39Q9UFE4 941 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 ERCC6Q03468 1493 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 RASSF8Q8NHQ8 419 aa13.04□□□□□ -0.32
CLTCL1-209ENST00000617103 ISY1Q9ULR0 285 aaKnown RBP13.03□□□□□ -0.32
CLTCL1-209ENST00000617103 TSR1Q2NL82 804 aaKnown RBP13.02□□□□□ -0.32
CLTCL1-209ENST00000617103 TPM1P09493 284 aa13.02□□□□□ -0.32
CLTCL1-209ENST00000617103 HNRNPMP52272 730 aaKnown RBP eCLIP13.02□□□□□ -0.32
CLTCL1-209ENST00000617103 RUFY2Q8WXA3 655 aa13.02□□□□□ -0.33
CLTCL1-209ENST00000617103 CHMP3Q9Y3E7 222 aa13.02□□□□□ -0.33
CLTCL1-209ENST00000617103 ZKSCAN1P17029 563 aaPredicted RBP13.01□□□□□ -0.33
CLTCL1-209ENST00000617103 HOMER1Q86YM7 354 aa13.01□□□□□ -0.33
CLTCL1-209ENST00000617103 INTS3Q68E01 1043 aaKnown RBP13.01□□□□□ -0.33
CLTCL1-209ENST00000617103 API5Q9BZZ5 524 aaKnown RBP13.01□□□□□ -0.33
CLTCL1-209ENST00000617103 KIF3BO15066 747 aa13.01□□□□□ -0.33
CLTCL1-209ENST00000617103 CCDC70Q6NSX1 233 aa13□□□□□ -0.33
CLTCL1-209ENST00000617103 TRAK1Q9UPV9 953 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms