RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 TMC1Q8TDI8 760 aa27.45■■□□□ 1.98
SHKBP1-225ENST00000600733 TTC37Q6PGP7 1564 aa27.44■■□□□ 1.98
SHKBP1-225ENST00000600733 MSH5O43196 834 aa27.43■■□□□ 1.98
SHKBP1-225ENST00000600733 RSPH4AQ5TD94 716 aa27.43■■□□□ 1.98
SHKBP1-225ENST00000600733 NUDCQ9Y266 331 aa27.43■■□□□ 1.98
SHKBP1-225ENST00000600733 CHD1O14646 1710 aa27.42■■□□□ 1.98
SHKBP1-225ENST00000600733 ARHGAP5Q13017 1502 aa27.42■■□□□ 1.98
SHKBP1-225ENST00000600733 CCDC144AA2RUR9 1427 aa27.41■■□□□ 1.98
SHKBP1-225ENST00000600733 RGL3Q3MIN7 710 aa27.39■■□□□ 1.98
SHKBP1-225ENST00000600733 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.39■■□□□ 1.98
SHKBP1-225ENST00000600733 PRAG1Q86YV5 1406 aa27.38■■□□□ 1.97
SHKBP1-225ENST00000600733 E9PCH4 1651 aa27.38■■□□□ 1.97
SHKBP1-225ENST00000600733 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.38■■□□□ 1.97
SHKBP1-225ENST00000600733 TRPM1Q7Z4N2 1603 aa27.38■■□□□ 1.97
SHKBP1-225ENST00000600733 FANCIQ9NVI1 1328 aa27.38■■□□□ 1.97
SHKBP1-225ENST00000600733 PLA2R1Q13018 1463 aa27.36■■□□□ 1.97
SHKBP1-225ENST00000600733 UNC13BO14795 1591 aa27.36■■□□□ 1.97
SHKBP1-225ENST00000600733 MAST1Q9Y2H9 1570 aa27.35■■□□□ 1.97
SHKBP1-225ENST00000600733 NBPF1Q3BBV0 1214 aa27.34■■□□□ 1.97
SHKBP1-225ENST00000600733 MYBBP1AQ9BQG0 1328 aaKnown RBP27.34■■□□□ 1.97
SHKBP1-225ENST00000600733 LRPPRCP42704 1394 aaKnown RBP27.32■■□□□ 1.96
SHKBP1-225ENST00000600733 RNF123Q5XPI4 1314 aa27.32■■□□□ 1.96
SHKBP1-225ENST00000600733 BRD4O60885 1362 aaPredicted RBP27.32■■□□□ 1.96
SHKBP1-225ENST00000600733 RALBP1Q15311 655 aa27.32■■□□□ 1.96
SHKBP1-225ENST00000600733 ERCC6L2Q5T890 1561 aa27.31■■□□□ 1.96
SHKBP1-225ENST00000600733 SHROOM2Q13796 1616 aa27.31■■□□□ 1.96
SHKBP1-225ENST00000600733 A2MP01023 1474 aa27.31■■□□□ 1.96
SHKBP1-225ENST00000600733 PLEKHH2Q8IVE3 1493 aa27.31■■□□□ 1.96
SHKBP1-225ENST00000600733 KTN1Q86UP2 1357 aaKnown RBP27.3■■□□□ 1.96
SHKBP1-225ENST00000600733 MYO5CQ9NQX4 1742 aa27.3■■□□□ 1.96
SHKBP1-225ENST00000600733 PLXNC1O60486 1568 aa27.28■■□□□ 1.96
SHKBP1-225ENST00000600733 IQGAP3Q86VI3 1631 aa27.27■■□□□ 1.96
SHKBP1-225ENST00000600733 ABCC2Q92887 1545 aa27.27■■□□□ 1.96
SHKBP1-225ENST00000600733 GPRASP1Q5JY77 1395 aa27.24■■□□□ 1.95
SHKBP1-225ENST00000600733 PARD3Q8TEW0 1356 aa27.22■■□□□ 1.95
SHKBP1-225ENST00000600733 DUOX2Q9NRD8 1548 aa27.2■■□□□ 1.95
SHKBP1-225ENST00000600733 PRDM15P57071 1507 aaPredicted RBP27.2■■□□□ 1.94
SHKBP1-225ENST00000600733 PER1O15534 1290 aaPredicted RBP27.2■■□□□ 1.94
SHKBP1-225ENST00000600733 NLRP13Q86W25 1043 aa27.2■■□□□ 1.94
SHKBP1-225ENST00000600733 DISP3Q9P2K9 1392 aa27.19■■□□□ 1.94
SHKBP1-225ENST00000600733 CCDC136Q96JN2 1154 aa27.19■■□□□ 1.94
SHKBP1-225ENST00000600733 COL17A1Q9UMD9 1497 aaPredicted RBP27.19■■□□□ 1.94
SHKBP1-225ENST00000600733 TESK2Q96S53 571 aa27.19■■□□□ 1.94
SHKBP1-225ENST00000600733 LAMC1P11047 1609 aa27.18■■□□□ 1.94
SHKBP1-225ENST00000600733 MAGI2Q86UL8 1455 aa27.16■■□□□ 1.94
SHKBP1-225ENST00000600733 SALL2Q9Y467 1007 aaPredicted RBP27.16■■□□□ 1.94
SHKBP1-225ENST00000600733 ERBINQ96RT1 1412 aa27.15■■□□□ 1.94
SHKBP1-225ENST00000600733 ATP10AO60312 1499 aa27.14■■□□□ 1.94
SHKBP1-225ENST00000600733 PLCH2O75038 1416 aa27.14■■□□□ 1.93
SHKBP1-225ENST00000600733 EIF2AK4Q9P2K8 1649 aaKnown RBP27.14■■□□□ 1.93
SHKBP1-225ENST00000600733 CC2D1BQ5T0F9 858 aaKnown RBP27.13■■□□□ 1.93
SHKBP1-225ENST00000600733 ERICH6Q7L0X2 663 aa27.11■■□□□ 1.93
SHKBP1-225ENST00000600733 ZCCHC11Q5TAX3 1644 aaKnown RBP27.11■■□□□ 1.93
SHKBP1-225ENST00000600733 EFCAB2Q5VUJ9 269 aa27.1■■□□□ 1.93
SHKBP1-225ENST00000600733 PANK3Q9H999 370 aa27.1■■□□□ 1.93
SHKBP1-225ENST00000600733 TRAPPC8Q9Y2L5 1435 aa27.09■■□□□ 1.93
SHKBP1-225ENST00000600733 ABCC1P33527 1531 aa27.08■■□□□ 1.93
SHKBP1-225ENST00000600733 TMF1P82094 1093 aa27.06■■□□□ 1.92
SHKBP1-225ENST00000600733 RRP1P56182 461 aaKnown RBP27.06■■□□□ 1.92
SHKBP1-225ENST00000600733 WASHC2CQ9Y4E1 1318 aa27.05■■□□□ 1.92
SHKBP1-225ENST00000600733 RCAN3Q9UKA8 241 aa27.04■■□□□ 1.92
SHKBP1-225ENST00000600733 RNF17Q9BXT8 1623 aaKnown RBP27.04■■□□□ 1.92
SHKBP1-225ENST00000600733 CDCA7LQ96GN5 454 aa27■■□□□ 1.91
SHKBP1-225ENST00000600733 PDE3BQ13370 1112 aa26.99■■□□□ 1.91
SHKBP1-225ENST00000600733 AFAP1Q8N556 730 aa26.99■■□□□ 1.91
SHKBP1-225ENST00000600733 EXOC6Q8TAG9 804 aa26.99■■□□□ 1.91
SHKBP1-225ENST00000600733 SPAG9O60271 1321 aaKnown RBP26.98■■□□□ 1.91
SHKBP1-225ENST00000600733 UHRF1BP1LA0JNW5 1464 aa26.98■■□□□ 1.91
SHKBP1-225ENST00000600733 MADDQ8WXG6 1647 aa26.97■■□□□ 1.91
SHKBP1-225ENST00000600733 BLMP54132 1417 aaPredicted RBP26.95■■□□□ 1.91
SHKBP1-225ENST00000600733 CLASP1Q7Z460 1538 aa26.95■■□□□ 1.91
SHKBP1-225ENST00000600733 ZFYVE16Q7Z3T8 1539 aa26.93■■□□□ 1.9
SHKBP1-225ENST00000600733 WDR7Q9Y4E6 1490 aa26.93■■□□□ 1.9
SHKBP1-225ENST00000600733 TRPM2O94759 1503 aa26.92■■□□□ 1.9
SHKBP1-225ENST00000600733 IQGAP1P46940 1657 aa26.92■■□□□ 1.9
SHKBP1-225ENST00000600733 SPHKAPQ2M3C7 1700 aa26.9■■□□□ 1.9
SHKBP1-225ENST00000600733 RTEL1-TNFRSF6BF6WH68 1400 aa26.89■■□□□ 1.9
SHKBP1-225ENST00000600733 CEP152O94986 1710 aa26.89■■□□□ 1.9
SHKBP1-225ENST00000600733 CLTCL1P53675 1640 aa26.89■■□□□ 1.9
SHKBP1-225ENST00000600733 INSRP06213 1382 aa26.89■■□□□ 1.89
SHKBP1-225ENST00000600733 ZMYM4Q5VZL5 1548 aa26.88■■□□□ 1.89
SHKBP1-225ENST00000600733 PTPRTO14522 1441 aa26.86■■□□□ 1.89
SHKBP1-225ENST00000600733 NOP58Q9Y2X3 529 aaKnown RBP26.86■■□□□ 1.89
SHKBP1-225ENST00000600733 KNSTRNQ9Y448 316 aa26.86■■□□□ 1.89
SHKBP1-225ENST00000600733 DEPDC5O75140 1603 aa26.85■■□□□ 1.89
SHKBP1-225ENST00000600733 ADAMTS8Q9UP79 889 aa26.85■■□□□ 1.89
SHKBP1-225ENST00000600733 PLIN1O60240 522 aa26.85■■□□□ 1.89
SHKBP1-225ENST00000600733 PAK3O75914 559 aaPredicted RBP26.84■■□□□ 1.89
SHKBP1-225ENST00000600733 ARAP3Q8WWN8 1544 aa26.84■■□□□ 1.89
SHKBP1-225ENST00000600733 SCAF11Q99590 1463 aaKnown RBP26.84■■□□□ 1.89
SHKBP1-225ENST00000600733 TET3O43151 1660 aa26.82■■□□□ 1.88
SHKBP1-225ENST00000600733 PPP2R1AP30153 589 aa26.82■■□□□ 1.88
SHKBP1-225ENST00000600733 AMER1Q5JTC6 1135 aaPredicted RBP26.82■■□□□ 1.88
SHKBP1-225ENST00000600733 SCAPERQ9BY12 1400 aa26.81■■□□□ 1.88
SHKBP1-225ENST00000600733 ANP32AP39687 249 aaKnown RBP26.81■■□□□ 1.88
SHKBP1-225ENST00000600733 ATP7AQ04656 1500 aa26.8■■□□□ 1.88
SHKBP1-225ENST00000600733 SYNMO15061 1565 aa26.79■■□□□ 1.88
SHKBP1-225ENST00000600733 FANCAO15360 1455 aa26.78■■□□□ 1.88
SHKBP1-225ENST00000600733 KIF3BO15066 747 aa26.78■■□□□ 1.88
SHKBP1-225ENST00000600733 INO80Q9ULG1 1556 aaPredicted RBP26.78■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms