RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 APAF1O14727 1248 aa16.26■□□□□ 0.19
USHBP1-207ENST00000597928 TROQ12816 1431 aaPredicted RBP16.26■□□□□ 0.19
USHBP1-207ENST00000597928 ERICH6BQ5W0A0 696 aa16.25■□□□□ 0.19
USHBP1-207ENST00000597928 HECW1Q76N89 1606 aa16.25■□□□□ 0.19
USHBP1-207ENST00000597928 RPRD2Q5VT52 1461 aaKnown RBP16.25■□□□□ 0.19
USHBP1-207ENST00000597928 C9orf84Q5VXU9 1444 aa16.24■□□□□ 0.19
USHBP1-207ENST00000597928 CAMSAP2Q08AD1 1489 aa16.23■□□□□ 0.19
USHBP1-207ENST00000597928 LAMC3Q9Y6N6 1575 aa16.23■□□□□ 0.19
USHBP1-207ENST00000597928 PLEKHG5O94827 1062 aa16.22■□□□□ 0.19
USHBP1-207ENST00000597928 U2SURPO15042 1029 aaKnown RBP16.22■□□□□ 0.19
USHBP1-207ENST00000597928 EFCAB2Q5VUJ9 269 aa16.22■□□□□ 0.19
USHBP1-207ENST00000597928 NUP153P49790 1475 aaKnown RBP16.22■□□□□ 0.19
USHBP1-207ENST00000597928 MRC2Q9UBG0 1479 aa16.22■□□□□ 0.19
USHBP1-207ENST00000597928 CTTNBP2Q8WZ74 1663 aa16.21■□□□□ 0.19
USHBP1-207ENST00000597928 CFAP70Q5T0N1 1121 aa16.21■□□□□ 0.18
USHBP1-207ENST00000597928 SPAG9O60271 1321 aaKnown RBP16.21■□□□□ 0.18
USHBP1-207ENST00000597928 TMEM132EQ6IEE7 984 aa16.2■□□□□ 0.18
USHBP1-207ENST00000597928 STAG3Q9UJ98 1225 aa16.2■□□□□ 0.18
USHBP1-207ENST00000597928 SLC24A1O60721 1099 aa16.2■□□□□ 0.18
USHBP1-207ENST00000597928 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.2■□□□□ 0.18
USHBP1-207ENST00000597928 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
USHBP1-207ENST00000597928 KIAA0586Q9BVV6 1533 aa16.19■□□□□ 0.18
USHBP1-207ENST00000597928 GOLGA2Q08379 1002 aa16.17■□□□□ 0.18
USHBP1-207ENST00000597928 MORC1Q86VD1 984 aa16.17■□□□□ 0.18
USHBP1-207ENST00000597928 GPATCH8Q9UKJ3 1502 aaKnown RBP16.16■□□□□ 0.18
USHBP1-207ENST00000597928 DENND4BO75064 1496 aaPredicted RBP16.16■□□□□ 0.18
USHBP1-207ENST00000597928 BCAR3O75815 825 aa16.15■□□□□ 0.18
USHBP1-207ENST00000597928 COG6Q9Y2V7 657 aa16.15■□□□□ 0.18
USHBP1-207ENST00000597928 KIF21AQ7Z4S6 1674 aa16.15■□□□□ 0.18
USHBP1-207ENST00000597928 ROCK1Q13464 1354 aa16.15■□□□□ 0.18
USHBP1-207ENST00000597928 EIF5BO60841 1220 aaKnown RBP16.15■□□□□ 0.18
USHBP1-207ENST00000597928 SLKQ9H2G2 1235 aaPredicted RBP16.15■□□□□ 0.18
USHBP1-207ENST00000597928 MLECQ14165 292 aa16.14■□□□□ 0.17
USHBP1-207ENST00000597928 GRIN2AQ12879 1464 aa16.14■□□□□ 0.17
USHBP1-207ENST00000597928 DHX29Q7Z478 1369 aaKnown RBP16.13■□□□□ 0.17
USHBP1-207ENST00000597928 TCERG1O14776 1098 aaKnown RBP16.13■□□□□ 0.17
USHBP1-207ENST00000597928 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
USHBP1-207ENST00000597928 SOX12O15370 315 aa16.12■□□□□ 0.17
USHBP1-207ENST00000597928 DISP3Q9P2K9 1392 aa16.12■□□□□ 0.17
USHBP1-207ENST00000597928 U2AF1L5P0DN76 240 aaPredicted RBP16.12■□□□□ 0.17
USHBP1-207ENST00000597928 U2AF1Q01081 240 aaKnown RBP eCLIP16.12■□□□□ 0.17
USHBP1-207ENST00000597928 PANK1Q8TE04 598 aa16.12■□□□□ 0.17
USHBP1-207ENST00000597928 PPP2R1AP30153 589 aa16.11■□□□□ 0.17
USHBP1-207ENST00000597928 IFT140Q96RY7 1462 aa16.11■□□□□ 0.17
USHBP1-207ENST00000597928 CDCA8Q53HL2 280 aa16.11■□□□□ 0.17
USHBP1-207ENST00000597928 SRPK2P78362 688 aaKnown RBP16.1■□□□□ 0.17
USHBP1-207ENST00000597928 PZPP20742 1482 aa16.1■□□□□ 0.17
USHBP1-207ENST00000597928 BRD4O60885 1362 aaPredicted RBP16.09■□□□□ 0.17
USHBP1-207ENST00000597928 WDR62O43379 1518 aa16.08■□□□□ 0.16
USHBP1-207ENST00000597928 ARHGAP5Q13017 1502 aa16.08■□□□□ 0.16
USHBP1-207ENST00000597928 DISP1Q96F81 1524 aa16.08■□□□□ 0.16
USHBP1-207ENST00000597928 SLC12A5Q9H2X9 1139 aa16.08■□□□□ 0.16
USHBP1-207ENST00000597928 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.08■□□□□ 0.16
USHBP1-207ENST00000597928 TEX14Q8IWB6 1497 aa16.07■□□□□ 0.16
USHBP1-207ENST00000597928 TCOF1Q13428 1488 aaKnown RBP16.07■□□□□ 0.16
USHBP1-207ENST00000597928 SAMD9Q5K651 1589 aa16.06■□□□□ 0.16
USHBP1-207ENST00000597928 MAGI1Q96QZ7 1491 aaPredicted RBP16.06■□□□□ 0.16
USHBP1-207ENST00000597928 FTSJ3Q8IY81 847 aaKnown RBP16.06■□□□□ 0.16
USHBP1-207ENST00000597928 PDE3BQ13370 1112 aa16.05■□□□□ 0.16
USHBP1-207ENST00000597928 PLEKHH2Q8IVE3 1493 aa16.05■□□□□ 0.16
USHBP1-207ENST00000597928 ABCA5Q8WWZ7 1642 aa16.05■□□□□ 0.16
USHBP1-207ENST00000597928 ATP10BO94823 1461 aa16.05■□□□□ 0.16
USHBP1-207ENST00000597928 NUTM2FA1L443 756 aa16.05■□□□□ 0.16
USHBP1-207ENST00000597928 ELL2O00472 640 aaPredicted RBP16.05■□□□□ 0.16
USHBP1-207ENST00000597928 IL27Q8NEV9 243 aa16.04■□□□□ 0.16
USHBP1-207ENST00000597928 POGKQ9P215 609 aa16.04■□□□□ 0.16
USHBP1-207ENST00000597928 RSPH4AQ5TD94 716 aa16.04■□□□□ 0.16
USHBP1-207ENST00000597928 SPATA31E1Q6ZUB1 1445 aa16.02■□□□□ 0.16
USHBP1-207ENST00000597928 KDM5BQ9UGL1 1544 aa16.02■□□□□ 0.16
USHBP1-207ENST00000597928 KIF14Q15058 1648 aa16.02■□□□□ 0.15
USHBP1-207ENST00000597928 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.01■□□□□ 0.15
USHBP1-207ENST00000597928 BACH2Q9BYV9 841 aa16.01■□□□□ 0.15
USHBP1-207ENST00000597928 LRRIQ1Q96JM4 1722 aa16.01■□□□□ 0.15
USHBP1-207ENST00000597928 GZF1Q9H116 711 aaPredicted RBP16.01■□□□□ 0.15
USHBP1-207ENST00000597928 DDRGK1Q96HY6 314 aa16.01■□□□□ 0.15
USHBP1-207ENST00000597928 CABP2Q9NPB3 220 aa16.01■□□□□ 0.15
USHBP1-207ENST00000597928 SYNJ2O15056 1496 aa16■□□□□ 0.15
USHBP1-207ENST00000597928 TESK2Q96S53 571 aa16■□□□□ 0.15
USHBP1-207ENST00000597928 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
USHBP1-207ENST00000597928 SPINK5Q9NQ38 1064 aaPredicted RBP16■□□□□ 0.15
USHBP1-207ENST00000597928 WASHC2CQ9Y4E1 1318 aa16■□□□□ 0.15
USHBP1-207ENST00000597928 PER1O15534 1290 aaPredicted RBP16■□□□□ 0.15
USHBP1-207ENST00000597928 CFAP53Q96M91 514 aa16■□□□□ 0.15
USHBP1-207ENST00000597928 RAPGEF6Q8TEU7 1601 aa16■□□□□ 0.15
USHBP1-207ENST00000597928 ERBINQ96RT1 1412 aa15.99■□□□□ 0.15
USHBP1-207ENST00000597928 KANK1Q14678 1352 aa15.99■□□□□ 0.15
USHBP1-207ENST00000597928 ARID4BQ4LE39 1312 aaPredicted RBP15.99■□□□□ 0.15
USHBP1-207ENST00000597928 ADAMTS12P58397 1594 aa15.99■□□□□ 0.15
USHBP1-207ENST00000597928 MINK1Q8N4C8 1332 aaPredicted RBP15.99■□□□□ 0.15
USHBP1-207ENST00000597928 CENPJQ9HC77 1338 aaPredicted RBP15.99■□□□□ 0.15
USHBP1-207ENST00000597928 APBB1O00213 710 aa15.98■□□□□ 0.15
USHBP1-207ENST00000597928 GGNBP2Q9H3C7 697 aa15.98■□□□□ 0.15
USHBP1-207ENST00000597928 ADGRF5Q8IZF2 1346 aa15.98■□□□□ 0.15
USHBP1-207ENST00000597928 HSP90AA1P07900 732 aaKnown RBP15.97■□□□□ 0.15
USHBP1-207ENST00000597928 MTHFSP49914 203 aa15.97■□□□□ 0.15
USHBP1-207ENST00000597928 KIAA0556O60303 1618 aa15.97■□□□□ 0.15
USHBP1-207ENST00000597928 SCAPERQ9BY12 1400 aa15.97■□□□□ 0.15
USHBP1-207ENST00000597928 TNNQ9UQP3 1299 aa15.97■□□□□ 0.15
USHBP1-207ENST00000597928 FBLN1P23142 703 aa15.96■□□□□ 0.15
USHBP1-207ENST00000597928 TSR2Q969E8 191 aaKnown RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms