RNA–Protein interactions for RNA: ENST00000594067.5

LIG1-206, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 2,697 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-206ENST00000594067 CCDC141Q6ZP82 1450 aa22.25■■□□□ 1.15
LIG1-206ENST00000594067 RNF123Q5XPI4 1314 aa22.24■■□□□ 1.15
LIG1-206ENST00000594067 SAMD9LQ8IVG5 1584 aa22.23■■□□□ 1.15
LIG1-206ENST00000594067 FAM135AQ9P2D6 1515 aa22.23■■□□□ 1.15
LIG1-206ENST00000594067 RGL3Q3MIN7 710 aa22.23■■□□□ 1.15
LIG1-206ENST00000594067 MYBBP1AQ9BQG0 1328 aaKnown RBP22.22■■□□□ 1.15
LIG1-206ENST00000594067 RALBP1Q15311 655 aa22.21■■□□□ 1.15
LIG1-206ENST00000594067 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.21■■□□□ 1.156e-7■■■■□ 20.3
LIG1-206ENST00000594067 MYT1LQ9UL68 1186 aa22.21■■□□□ 1.15
LIG1-206ENST00000594067 BRD4O60885 1362 aaPredicted RBP22.2■■□□□ 1.14
LIG1-206ENST00000594067 CCDC144AA2RUR9 1427 aa22.19■■□□□ 1.14
LIG1-206ENST00000594067 CDC42BPBQ9Y5S2 1711 aa22.19■■□□□ 1.14
LIG1-206ENST00000594067 CCDC136Q96JN2 1154 aa22.19■■□□□ 1.14
LIG1-206ENST00000594067 LRPPRCP42704 1394 aaKnown RBP22.19■■□□□ 1.14
LIG1-206ENST00000594067 NBPF1Q3BBV0 1214 aa22.18■■□□□ 1.14
LIG1-206ENST00000594067 RSPH4AQ5TD94 716 aa22.18■■□□□ 1.14
LIG1-206ENST00000594067 PRAG1Q86YV5 1406 aa22.17■■□□□ 1.14
LIG1-206ENST00000594067 PREX2Q70Z35 1606 aa22.17■■□□□ 1.14
LIG1-206ENST00000594067 KTN1Q86UP2 1357 aaKnown RBP22.16■■□□□ 1.14
LIG1-206ENST00000594067 SYCP2Q9BX26 1530 aa22.15■■□□□ 1.14
LIG1-206ENST00000594067 NOP58Q9Y2X3 529 aaKnown RBP22.14■■□□□ 1.14
LIG1-206ENST00000594067 SALL2Q9Y467 1007 aaPredicted RBP22.13■■□□□ 1.13
LIG1-206ENST00000594067 E9PCH4 1651 aa22.13■■□□□ 1.13
LIG1-206ENST00000594067 PLA2R1Q13018 1463 aa22.12■■□□□ 1.13
LIG1-206ENST00000594067 ARHGAP5Q13017 1502 aa22.12■■□□□ 1.13
LIG1-206ENST00000594067 TRPM1Q7Z4N2 1603 aa22.11■■□□□ 1.13
LIG1-206ENST00000594067 PAK3O75914 559 aaPredicted RBP22.11■■□□□ 1.13
LIG1-206ENST00000594067 DEKP35659 375 aaKnown RBP22.1■■□□□ 1.13
LIG1-206ENST00000594067 NLRP13Q86W25 1043 aa22.1■■□□□ 1.13
LIG1-206ENST00000594067 A2MP01023 1474 aa22.1■■□□□ 1.13
LIG1-206ENST00000594067 TTC37Q6PGP7 1564 aa22.09■■□□□ 1.13
LIG1-206ENST00000594067 PARD3Q8TEW0 1356 aa22.08■■□□□ 1.13
LIG1-206ENST00000594067 PLEKHH2Q8IVE3 1493 aa22.08■■□□□ 1.12
LIG1-206ENST00000594067 PER1O15534 1290 aaPredicted RBP22.07■■□□□ 1.12
LIG1-206ENST00000594067 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.06■■□□□ 1.12
LIG1-206ENST00000594067 UNC13BO14795 1591 aa22.06■■□□□ 1.12
LIG1-206ENST00000594067 GPRASP1Q5JY77 1395 aa22.06■■□□□ 1.12
LIG1-206ENST00000594067 DISP3Q9P2K9 1392 aa22.05■■□□□ 1.12
LIG1-206ENST00000594067 CC2D1BQ5T0F9 858 aaKnown RBP22.05■■□□□ 1.12
LIG1-206ENST00000594067 MAST1Q9Y2H9 1570 aa22.05■■□□□ 1.12
LIG1-206ENST00000594067 RRP1P56182 461 aaKnown RBP22.04■■□□□ 1.12
LIG1-206ENST00000594067 TESK2Q96S53 571 aa22.04■■□□□ 1.12
LIG1-206ENST00000594067 COL17A1Q9UMD9 1497 aaPredicted RBP22.02■■□□□ 1.12
LIG1-206ENST00000594067 RCAN3Q9UKA8 241 aa22.02■■□□□ 1.11
LIG1-206ENST00000594067 PANK3Q9H999 370 aa22.01■■□□□ 1.11
LIG1-206ENST00000594067 NBR1Q14596 966 aa22.01■■□□□ 1.11
LIG1-206ENST00000594067 EXOC6Q8TAG9 804 aa22.01■■□□□ 1.11
LIG1-206ENST00000594067 IPO9Q96P70 1041 aaKnown RBP22■■□□□ 1.11
LIG1-206ENST00000594067 IQGAP3Q86VI3 1631 aa21.99■■□□□ 1.11
LIG1-206ENST00000594067 PRDM15P57071 1507 aaPredicted RBP21.99■■□□□ 1.11
LIG1-206ENST00000594067 ERBINQ96RT1 1412 aa21.99■■□□□ 1.11
LIG1-206ENST00000594067 CHD1O14646 1710 aa21.98■■□□□ 1.11
LIG1-206ENST00000594067 ANP32AP39687 249 aaKnown RBP21.98■■□□□ 1.11
LIG1-206ENST00000594067 CDCA7LQ96GN5 454 aa21.98■■□□□ 1.11
LIG1-206ENST00000594067 PLXNC1O60486 1568 aa21.97■■□□□ 1.11
LIG1-206ENST00000594067 ERCC6L2Q5T890 1561 aa21.97■■□□□ 1.11
LIG1-206ENST00000594067 TMF1P82094 1093 aa21.96■■□□□ 1.11
LIG1-206ENST00000594067 PDE3BQ13370 1112 aa21.96■■□□□ 1.11
LIG1-206ENST00000594067 DUOX2Q9NRD8 1548 aa21.96■■□□□ 1.11
LIG1-206ENST00000594067 MYO5CQ9NQX4 1742 aa21.95■■□□□ 1.1
LIG1-206ENST00000594067 WASHC2CQ9Y4E1 1318 aa21.95■■□□□ 1.1
LIG1-206ENST00000594067 ABCC2Q92887 1545 aa21.95■■□□□ 1.1
LIG1-206ENST00000594067 LAMC1P11047 1609 aa21.94■■□□□ 1.1
LIG1-206ENST00000594067 EIF2AK4Q9P2K8 1649 aaKnown RBP21.92■■□□□ 1.1
LIG1-206ENST00000594067 ATP10AO60312 1499 aa21.92■■□□□ 1.1
LIG1-206ENST00000594067 SHROOM2Q13796 1616 aa21.92■■□□□ 1.1
LIG1-206ENST00000594067 ZBTB47Q9UFB7 747 aaPredicted RBP21.91■■□□□ 1.1
LIG1-206ENST00000594067 MAGI2Q86UL8 1455 aa21.91■■□□□ 1.1
LIG1-206ENST00000594067 EFCAB2Q5VUJ9 269 aa21.91■■□□□ 1.1
LIG1-206ENST00000594067 PLCH2O75038 1416 aa21.89■■□□□ 1.1
LIG1-206ENST00000594067 TRAPPC8Q9Y2L5 1435 aa21.88■■□□□ 1.09
LIG1-206ENST00000594067 BLMP54132 1417 aaPredicted RBP21.87■■□□□ 1.09
LIG1-206ENST00000594067 PLIN1O60240 522 aa21.87■■□□□ 1.09
LIG1-206ENST00000594067 ADAMTS8Q9UP79 889 aa21.83■■□□□ 1.08
LIG1-206ENST00000594067 RNF17Q9BXT8 1623 aaKnown RBP21.82■■□□□ 1.08
LIG1-206ENST00000594067 INSRP06213 1382 aa21.82■■□□□ 1.08
LIG1-206ENST00000594067 AFAP1Q8N556 730 aa21.82■■□□□ 1.08
LIG1-206ENST00000594067 ABCC1P33527 1531 aa21.81■■□□□ 1.08
LIG1-206ENST00000594067 SPAG9O60271 1321 aaKnown RBP21.81■■□□□ 1.08
LIG1-206ENST00000594067 KNSTRNQ9Y448 316 aa21.81■■□□□ 1.08
LIG1-206ENST00000594067 TCERG1O14776 1098 aaKnown RBP21.81■■□□□ 1.08
LIG1-206ENST00000594067 WDR7Q9Y4E6 1490 aa21.8■■□□□ 1.08
LIG1-206ENST00000594067 ZCCHC11Q5TAX3 1644 aaKnown RBP21.8■■□□□ 1.08
LIG1-206ENST00000594067 PPP2R1AP30153 589 aa21.79■■□□□ 1.08
LIG1-206ENST00000594067 RTL5Q5HYW3 569 aaPredicted RBP21.79■■□□□ 1.08
LIG1-206ENST00000594067 NPM2Q86SE8 214 aaKnown RBP21.79■■□□□ 1.08
LIG1-206ENST00000594067 CRBNQ96SW2 442 aa21.79■■□□□ 1.08
LIG1-206ENST00000594067 ZMYM4Q5VZL5 1548 aa21.79■■□□□ 1.08
LIG1-206ENST00000594067 MADDQ8WXG6 1647 aa21.78■■□□□ 1.08
LIG1-206ENST00000594067 PDE4AP27815 886 aa21.76■■□□□ 1.07
LIG1-206ENST00000594067 WDR43Q15061 677 aaKnown RBP eCLIP21.75■■□□□ 1.072e-6■■■■■ 54.5
LIG1-206ENST00000594067 AMER1Q5JTC6 1135 aaPredicted RBP21.75■■□□□ 1.07
LIG1-206ENST00000594067 TRPM2O94759 1503 aa21.73■■□□□ 1.07
LIG1-206ENST00000594067 SCAF11Q99590 1463 aaKnown RBP21.73■■□□□ 1.07
LIG1-206ENST00000594067 IQGAP1P46940 1657 aa21.73■■□□□ 1.07
LIG1-206ENST00000594067 SKAP1Q86WV1 359 aa21.73■■□□□ 1.07
LIG1-206ENST00000594067 BACH2Q9BYV9 841 aa21.73■■□□□ 1.07
LIG1-206ENST00000594067 CDCA8Q53HL2 280 aa21.72■■□□□ 1.07
LIG1-206ENST00000594067 C20orf194Q5TEA3 1177 aa21.72■■□□□ 1.07
LIG1-206ENST00000594067 PLEKHH1Q9ULM0 1364 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms