RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PREX1Q8TCU6 1659 aa9.97□□□□□ -0.81
VPS53-208ENST00000570650 CLCN6P51797 869 aa9.97□□□□□ -0.81
VPS53-208ENST00000570650 ARHGEF12Q9NZN5 1544 aa9.97□□□□□ -0.81
VPS53-208ENST00000570650 HECW1Q76N89 1606 aa9.96□□□□□ -0.81
VPS53-208ENST00000570650 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.96□□□□□ -0.82
VPS53-208ENST00000570650 UHRF1BP1Q6BDS2 1440 aa9.95□□□□□ -0.82
VPS53-208ENST00000570650 STRCQ7RTU9 1775 aa9.94□□□□□ -0.82
VPS53-208ENST00000570650 ATP10AO60312 1499 aa9.94□□□□□ -0.82
VPS53-208ENST00000570650 C9orf84Q5VXU9 1444 aa9.94□□□□□ -0.82
VPS53-208ENST00000570650 CEBPAP49715 358 aaPredicted RBP9.94□□□□□ -0.82
VPS53-208ENST00000570650 PTPRTO14522 1441 aa9.93□□□□□ -0.82
VPS53-208ENST00000570650 SCAPERQ9BY12 1400 aa9.93□□□□□ -0.82
VPS53-208ENST00000570650 PCDHB13Q9Y5F0 798 aa9.93□□□□□ -0.82
VPS53-208ENST00000570650 SETD1BQ9UPS6 1966 aaKnown RBP9.92□□□□□ -0.82
VPS53-208ENST00000570650 TRPC6Q9Y210 931 aa9.92□□□□□ -0.82
VPS53-208ENST00000570650 PLCH2O75038 1416 aa9.91□□□□□ -0.82
VPS53-208ENST00000570650 CHRM1P11229 460 aaPredicted RBP9.91□□□□□ -0.82
VPS53-208ENST00000570650 IFNL1Q8IU54 200 aa9.91□□□□□ -0.82
VPS53-208ENST00000570650 IQSEC2Q5JU85 1478 aa9.91□□□□□ -0.82
VPS53-208ENST00000570650 POTEIP0CG38 1075 aa9.9□□□□□ -0.82
VPS53-208ENST00000570650 PKD2Q13563 968 aa9.9□□□□□ -0.82
VPS53-208ENST00000570650 LTBP4Q8N2S1 1624 aa9.89□□□□□ -0.83
VPS53-208ENST00000570650 SGIP1Q9BQI5 828 aa9.89□□□□□ -0.83
VPS53-208ENST00000570650 PCDHB8Q9UN66 801 aa9.89□□□□□ -0.83
VPS53-208ENST00000570650 RANGAP1P46060 587 aaPredicted RBP9.88□□□□□ -0.83
VPS53-208ENST00000570650 EFCAB2Q5VUJ9 269 aa9.88□□□□□ -0.83
VPS53-208ENST00000570650 ZNF518AQ6AHZ1 1483 aa9.86□□□□□ -0.83
VPS53-208ENST00000570650 DCBLD2Q96PD2 775 aa9.86□□□□□ -0.83
VPS53-208ENST00000570650 CDK13Q14004 1512 aaKnown RBP9.86□□□□□ -0.83
VPS53-208ENST00000570650 C3P01024 1663 aa9.84□□□□□ -0.83
VPS53-208ENST00000570650 NCOA1Q15788 1441 aa9.84□□□□□ -0.83
VPS53-208ENST00000570650 TRAPPC8Q9Y2L5 1435 aa9.84□□□□□ -0.83
VPS53-208ENST00000570650 ESF1Q9H501 851 aaKnown RBP9.84□□□□□ -0.83
VPS53-208ENST00000570650 MYT1LQ9UL68 1186 aa9.84□□□□□ -0.83
VPS53-208ENST00000570650 KDM5CP41229 1560 aa9.84□□□□□ -0.83
VPS53-208ENST00000570650 REREQ9P2R6 1566 aa9.84□□□□□ -0.83
VPS53-208ENST00000570650 MYO5CQ9NQX4 1742 aa9.83□□□□□ -0.84
VPS53-208ENST00000570650 ECM2O94769 699 aaPredicted RBP9.83□□□□□ -0.84
VPS53-208ENST00000570650 AFAP1Q8N556 730 aa9.83□□□□□ -0.84
VPS53-208ENST00000570650 RNF25Q96BH1 459 aaPredicted RBP9.83□□□□□ -0.84
VPS53-208ENST00000570650 BMP2KQ9NSY1 1161 aaPredicted RBP9.83□□□□□ -0.84
VPS53-208ENST00000570650 DIP2CQ9Y2E4 1556 aa9.83□□□□□ -0.84
VPS53-208ENST00000570650 ZNF467Q7Z7K2 595 aaPredicted RBP9.82□□□□□ -0.84
VPS53-208ENST00000570650 AGLP35573 1532 aa9.82□□□□□ -0.84
VPS53-208ENST00000570650 UBAP1LF5GYI3 381 aa9.81□□□□□ -0.84
VPS53-208ENST00000570650 ATMINO43313 823 aaPredicted RBP9.81□□□□□ -0.84
VPS53-208ENST00000570650 CDK11AQ9UQ88 783 aaPredicted RBP9.81□□□□□ -0.84
VPS53-208ENST00000570650 ARHGAP5Q13017 1502 aa9.81□□□□□ -0.84
VPS53-208ENST00000570650 CNTLNQ9NXG0 1405 aa9.81□□□□□ -0.84
VPS53-208ENST00000570650 MLH3Q9UHC1 1453 aa9.8□□□□□ -0.84
VPS53-208ENST00000570650 TIE1P35590 1138 aa9.8□□□□□ -0.84
VPS53-208ENST00000570650 ASTLQ6HA08 431 aaPredicted RBP9.8□□□□□ -0.84
VPS53-208ENST00000570650 KIF14Q15058 1648 aa9.79□□□□□ -0.84
VPS53-208ENST00000570650 CAMSAP1Q5T5Y3 1602 aa9.79□□□□□ -0.84
VPS53-208ENST00000570650 ABCA6Q8N139 1617 aa9.79□□□□□ -0.84
VPS53-208ENST00000570650 TTLL13PA6NNM8 815 aa9.79□□□□□ -0.84
VPS53-208ENST00000570650 ATN1P54259 1190 aaPredicted RBP9.79□□□□□ -0.84
VPS53-208ENST00000570650 PELP1Q8IZL8 1130 aaKnown RBP9.79□□□□□ -0.84
VPS53-208ENST00000570650 ATP1B4Q9UN42 357 aaPredicted RBP9.79□□□□□ -0.84
VPS53-208ENST00000570650 NPATQ14207 1427 aa9.79□□□□□ -0.84
VPS53-208ENST00000570650 EEA1Q15075 1411 aa9.79□□□□□ -0.84
VPS53-208ENST00000570650 ZNF335Q9H4Z2 1342 aaPredicted RBP9.79□□□□□ -0.84
VPS53-208ENST00000570650 TROQ12816 1431 aaPredicted RBP9.77□□□□□ -0.85
VPS53-208ENST00000570650 RGL2O15211 777 aa9.77□□□□□ -0.85
VPS53-208ENST00000570650 TMEM106CQ9BVX2 250 aa9.77□□□□□ -0.85
VPS53-208ENST00000570650 NCKAP5LQ9HCH0 1330 aa9.77□□□□□ -0.85
VPS53-208ENST00000570650 CLIP1P30622 1438 aa9.76□□□□□ -0.85
VPS53-208ENST00000570650 FMN1Q68DA7 1419 aa9.76□□□□□ -0.85
VPS53-208ENST00000570650 RIOK3O14730 519 aaKnown RBP9.76□□□□□ -0.85
VPS53-208ENST00000570650 PLA2R1Q13018 1463 aa9.75□□□□□ -0.85
VPS53-208ENST00000570650 PSEN1P49768 467 aa9.75□□□□□ -0.85
VPS53-208ENST00000570650 MED1Q15648 1581 aaPredicted RBP9.75□□□□□ -0.85
VPS53-208ENST00000570650 ZMYM3Q14202 1370 aa9.75□□□□□ -0.85
VPS53-208ENST00000570650 MROH2AA6NES4 1674 aa9.74□□□□□ -0.85
VPS53-208ENST00000570650 ABCC1P33527 1531 aa9.74□□□□□ -0.85
VPS53-208ENST00000570650 PDAP1Q13442 181 aaKnown RBP9.74□□□□□ -0.85
VPS53-208ENST00000570650 HSPA1LP34931 641 aa9.73□□□□□ -0.85
VPS53-208ENST00000570650 CDC42BPBQ9Y5S2 1711 aa9.73□□□□□ -0.85
VPS53-208ENST00000570650 KIDINS220Q9ULH0 1771 aa9.73□□□□□ -0.85
VPS53-208ENST00000570650 TCOF1Q13428 1488 aaKnown RBP9.72□□□□□ -0.85
VPS53-208ENST00000570650 ITSN2Q9NZM3 1697 aa9.72□□□□□ -0.85
VPS53-208ENST00000570650 TRIM35Q9UPQ4 493 aa9.72□□□□□ -0.85
VPS53-208ENST00000570650 PREX2Q70Z35 1606 aa9.71□□□□□ -0.85
VPS53-208ENST00000570650 ZNF142P52746 1687 aaPredicted RBP9.71□□□□□ -0.85
VPS53-208ENST00000570650 TOM1O60784 492 aa9.71□□□□□ -0.86
VPS53-208ENST00000570650 RTN4Q9NQC3 1192 aaKnown RBP9.71□□□□□ -0.86
VPS53-208ENST00000570650 CEP170BQ9Y4F5 1589 aaPredicted RBP9.71□□□□□ -0.86
VPS53-208ENST00000570650 MYO3AQ8NEV4 1616 aa9.71□□□□□ -0.86
VPS53-208ENST00000570650 PIP4K2BP78356 416 aa9.7□□□□□ -0.86
VPS53-208ENST00000570650 ARHGAP35Q9NRY4 1499 aa9.7□□□□□ -0.86
VPS53-208ENST00000570650 VGFO15240 615 aaPredicted RBP9.69□□□□□ -0.86
VPS53-208ENST00000570650 PTPRKQ15262 1439 aa9.69□□□□□ -0.86
VPS53-208ENST00000570650 SUPT6HQ7KZ85 1726 aaKnown RBP9.69□□□□□ -0.86
VPS53-208ENST00000570650 SAMD9LQ8IVG5 1584 aa9.68□□□□□ -0.86
VPS53-208ENST00000570650 CPS1P31327 1500 aa9.68□□□□□ -0.86
VPS53-208ENST00000570650 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.68□□□□□ -0.86
VPS53-208ENST00000570650 ZFP91Q96JP5 570 aaPredicted RBP9.68□□□□□ -0.86
VPS53-208ENST00000570650 CLTCQ00610 1675 aaKnown RBP9.67□□□□□ -0.86
VPS53-208ENST00000570650 SPAG9O60271 1321 aaKnown RBP9.67□□□□□ -0.86
VPS53-208ENST00000570650 UBTFP17480 764 aaKnown RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms