RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 EFCAB5A4FU69 1503 aa14.58□□□□□ -0.08
CLN3-238ENST00000569430 APAF1O14727 1248 aa14.58□□□□□ -0.08
CLN3-238ENST00000569430 MFAP1P55081 439 aaKnown RBP14.58□□□□□ -0.08
CLN3-238ENST00000569430 PRDM2Q13029 1718 aa14.57□□□□□ -0.08
CLN3-238ENST00000569430 HSP90AB1P08238 724 aaKnown RBP14.57□□□□□ -0.08
CLN3-238ENST00000569430 C20orf194Q5TEA3 1177 aa14.57□□□□□ -0.08
CLN3-238ENST00000569430 BRD4O60885 1362 aaPredicted RBP14.56□□□□□ -0.08
CLN3-238ENST00000569430 CFAP43Q8NDM7 1665 aa14.56□□□□□ -0.08
CLN3-238ENST00000569430 HSCBQ8IWL3 235 aa14.56□□□□□ -0.08
CLN3-238ENST00000569430 NCOA1Q15788 1441 aa14.56□□□□□ -0.08
CLN3-238ENST00000569430 VSIG10Q8N0Z9 540 aa14.56□□□□□ -0.08
CLN3-238ENST00000569430 RRP7AQ9Y3A4 280 aaKnown RBP14.56□□□□□ -0.08
CLN3-238ENST00000569430 PRG4Q92954 1404 aaPredicted RBP14.56□□□□□ -0.08
CLN3-238ENST00000569430 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.55□□□□□ -0.08
CLN3-238ENST00000569430 GOLGA6L22H0YM25 854 aa14.55□□□□□ -0.08
CLN3-238ENST00000569430 GRIN2BQ13224 1484 aa14.55□□□□□ -0.08
CLN3-238ENST00000569430 PTPN23Q9H3S7 1636 aa14.54□□□□□ -0.08
CLN3-238ENST00000569430 KIF21AQ7Z4S6 1674 aa14.54□□□□□ -0.08
CLN3-238ENST00000569430 TPRNQ4KMQ1 711 aa14.54□□□□□ -0.08
CLN3-238ENST00000569430 EPRSP07814 1512 aaKnown RBP14.53□□□□□ -0.08
CLN3-238ENST00000569430 KDM6BO15054 1643 aa14.53□□□□□ -0.08
CLN3-238ENST00000569430 ARID3AQ99856 593 aa14.53□□□□□ -0.08
CLN3-238ENST00000569430 FOXD4L1Q9NU39 408 aa14.53□□□□□ -0.08
CLN3-238ENST00000569430 THOC2Q8NI27 1593 aaKnown RBP14.53□□□□□ -0.08
CLN3-238ENST00000569430 SLC24A1O60721 1099 aa14.53□□□□□ -0.08
CLN3-238ENST00000569430 NBPF1Q3BBV0 1214 aa14.52□□□□□ -0.08
CLN3-238ENST00000569430 JPH4Q96JJ6 628 aa14.52□□□□□ -0.08
CLN3-238ENST00000569430 CENPJQ9HC77 1338 aaPredicted RBP14.52□□□□□ -0.09
CLN3-238ENST00000569430 CUL7Q14999 1698 aa14.52□□□□□ -0.09
CLN3-238ENST00000569430 U2SURPO15042 1029 aaKnown RBP14.52□□□□□ -0.09
CLN3-238ENST00000569430 MYH16Q9H6N6 1097 aa14.52□□□□□ -0.09
CLN3-238ENST00000569430 CTTNBP2Q8WZ74 1663 aa14.52□□□□□ -0.09
CLN3-238ENST00000569430 CFAP53Q96M91 514 aa14.51□□□□□ -0.09
CLN3-238ENST00000569430 HSP90AA2PQ14568 343 aaPredicted RBP14.51□□□□□ -0.09
CLN3-238ENST00000569430 LAMC3Q9Y6N6 1575 aa14.5□□□□□ -0.09
CLN3-238ENST00000569430 PANK1Q8TE04 598 aa14.5□□□□□ -0.09
CLN3-238ENST00000569430 MORC1Q86VD1 984 aa14.5□□□□□ -0.09
CLN3-238ENST00000569430 ZBTB7CA1YPR0 619 aa14.49□□□□□ -0.09
CLN3-238ENST00000569430 RWDD1Q9H446 243 aaPredicted RBP14.49□□□□□ -0.09
CLN3-238ENST00000569430 POGKQ9P215 609 aa14.49□□□□□ -0.09
CLN3-238ENST00000569430 ANKRD30BQ9BXX2 1392 aa14.49□□□□□ -0.09
CLN3-238ENST00000569430 PLB1Q6P1J6 1458 aa14.49□□□□□ -0.09
CLN3-238ENST00000569430 BCAR3O75815 825 aa14.48□□□□□ -0.09
CLN3-238ENST00000569430 SUPT6HQ7KZ85 1726 aaKnown RBP14.47□□□□□ -0.09
CLN3-238ENST00000569430 LRRIQ1Q96JM4 1722 aa14.47□□□□□ -0.09
CLN3-238ENST00000569430 PMFBP1Q8TBY8 1022 aa14.47□□□□□ -0.09
CLN3-238ENST00000569430 ITPRIPQ8IWB1 547 aa14.46□□□□□ -0.1
CLN3-238ENST00000569430 EHBP1L1Q8N3D4 1523 aa14.46□□□□□ -0.1
CLN3-238ENST00000569430 MAPK8IP3Q9UPT6 1336 aa14.45□□□□□ -0.1
CLN3-238ENST00000569430 PTMAP06454 111 aaKnown RBP14.45□□□□□ -0.1
CLN3-238ENST00000569430 U2AF1L5P0DN76 240 aaPredicted RBP14.45□□□□□ -0.1
CLN3-238ENST00000569430 U2AF1Q01081 240 aaKnown RBP eCLIP14.45□□□□□ -0.1
CLN3-238ENST00000569430 ABCA5Q8WWZ7 1642 aa14.45□□□□□ -0.1
CLN3-238ENST00000569430 IQGAP2Q13576 1575 aa14.44□□□□□ -0.1
CLN3-238ENST00000569430 DNTTIP2Q5QJE6 756 aaKnown RBP14.44□□□□□ -0.1
CLN3-238ENST00000569430 CGNL1Q0VF96 1302 aa14.44□□□□□ -0.1
CLN3-238ENST00000569430 MSNP26038 577 aaKnown RBP14.43□□□□□ -0.1
CLN3-238ENST00000569430 UGGT2Q9NYU1 1516 aa14.43□□□□□ -0.1
CLN3-238ENST00000569430 CCDC144AA2RUR9 1427 aa14.43□□□□□ -0.1
CLN3-238ENST00000569430 E9PSI1 815 aa14.43□□□□□ -0.1
CLN3-238ENST00000569430 FAM43AQ8N2R8 423 aa14.43□□□□□ -0.1
CLN3-238ENST00000569430 DENND4BO75064 1496 aaPredicted RBP14.43□□□□□ -0.1
CLN3-238ENST00000569430 ABCC5O15440 1437 aa14.43□□□□□ -0.1
CLN3-238ENST00000569430 SAFB2Q14151 953 aaKnown RBP eCLIP14.42□□□□□ -0.1
CLN3-238ENST00000569430 DAPK1P53355 1430 aa14.42□□□□□ -0.1
CLN3-238ENST00000569430 GBP4Q96PP9 640 aa14.41□□□□□ -0.1
CLN3-238ENST00000569430 SMC4Q9NTJ3 1288 aa14.41□□□□□ -0.1
CLN3-238ENST00000569430 ANKRD50Q9ULJ7 1429 aa14.4□□□□□ -0.1
CLN3-238ENST00000569430 SAMD9Q5K651 1589 aa14.4□□□□□ -0.1
CLN3-238ENST00000569430 MRC2Q9UBG0 1479 aa14.4□□□□□ -0.1
CLN3-238ENST00000569430 PPP2R1AP30153 589 aa14.39□□□□□ -0.11
CLN3-238ENST00000569430 APBB1O00213 710 aa14.39□□□□□ -0.11
CLN3-238ENST00000569430 MIA2Q96PC5 1412 aa14.38□□□□□ -0.11
CLN3-238ENST00000569430 PLCB2Q00722 1185 aa14.38□□□□□ -0.11
CLN3-238ENST00000569430 KIAA1107Q9UPP5 1409 aa14.38□□□□□ -0.11
CLN3-238ENST00000569430 TARBP1Q13395 1621 aaKnown RBP14.37□□□□□ -0.11
CLN3-238ENST00000569430 NUP153P49790 1475 aaKnown RBP14.37□□□□□ -0.11
CLN3-238ENST00000569430 CHMP5Q9NZZ3 219 aa14.37□□□□□ -0.11
CLN3-238ENST00000569430 HECW1Q76N89 1606 aa14.37□□□□□ -0.11
CLN3-238ENST00000569430 RPRD2Q5VT52 1461 aaKnown RBP14.37□□□□□ -0.11
CLN3-238ENST00000569430 TRAK2O60296 914 aa14.36□□□□□ -0.11
CLN3-238ENST00000569430 C22orf23Q9BZE7 217 aa14.35□□□□□ -0.11
CLN3-238ENST00000569430 RNF123Q5XPI4 1314 aa14.34□□□□□ -0.11
CLN3-238ENST00000569430 PDZRN3Q9UPQ7 1066 aa14.34□□□□□ -0.11
CLN3-238ENST00000569430 DDX11L8A8MPP1 907 aa14.34□□□□□ -0.11
CLN3-238ENST00000569430 DHX29Q7Z478 1369 aaKnown RBP14.33□□□□□ -0.11
CLN3-238ENST00000569430 DISP1Q96F81 1524 aa14.33□□□□□ -0.12
CLN3-238ENST00000569430 WASHC2CQ9Y4E1 1318 aa14.33□□□□□ -0.12
CLN3-238ENST00000569430 DDX49Q9Y6V7 483 aaKnown RBP14.33□□□□□ -0.12
CLN3-238ENST00000569430 KDM5BQ9UGL1 1544 aa14.32□□□□□ -0.12
CLN3-238ENST00000569430 FOXD4L5Q5VV16 416 aaPredicted RBP14.32□□□□□ -0.12
CLN3-238ENST00000569430 FOXD4L4Q8WXT5 416 aaPredicted RBP14.32□□□□□ -0.12
CLN3-238ENST00000569430 STAG3Q9UJ98 1225 aa14.32□□□□□ -0.12
CLN3-238ENST00000569430 WDR62O43379 1518 aa14.32□□□□□ -0.12
CLN3-238ENST00000569430 GRIN2AQ12879 1464 aa14.31□□□□□ -0.12
CLN3-238ENST00000569430 ARHGEF11O15085 1522 aa14.31□□□□□ -0.12
CLN3-238ENST00000569430 KIAA0586Q9BVV6 1533 aa14.31□□□□□ -0.12
CLN3-238ENST00000569430 TRAK1Q9UPV9 953 aa14.31□□□□□ -0.12
CLN3-238ENST00000569430 DUSP27Q5VZP5 1158 aa14.31□□□□□ -0.12
CLN3-238ENST00000569430 ZKSCAN2Q63HK3 967 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 98 ms