RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	PRX	Q9BXM0	1461 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	FRAT2	O75474	233 aa	Predicted RBP	11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	USP8	P40818	1118 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	MRE11	P49959	708 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	PLPPR3	Q6T4P5	718 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	ACBD3	Q9H3P7	528 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	SYNJ1	O43426	1573 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	KIF7	Q2M1P5	1343 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	NLRP13	Q86W25	1043 aa		11.98	□□□□□ -0.49
TRPM1-208	ENST00000558768	CFAP53	Q96M91	514 aa		11.97	□□□□□ -0.49
TRPM1-208	ENST00000558768	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.97	□□□□□ -0.49
TRPM1-208	ENST00000558768	KIF15	Q9NS87	1388 aa		11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	HMMR	O75330	724 aa		11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	GNL2	Q13823	731 aa	Known RBP	11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	HSP90B2P	Q58FF3	399 aa		11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	CRBN	Q96SW2	442 aa		11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	KDM2A	Q9Y2K7	1162 aa		11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	CCDC70	Q6NSX1	233 aa		11.96	□□□□□ -0.49
TRPM1-208	ENST00000558768	CCDC34	Q96HJ3	373 aa		11.96	□□□□□ -0.5
TRPM1-208	ENST00000558768	KTN1	Q86UP2	1357 aa	Known RBP	11.95	□□□□□ -0.5
TRPM1-208	ENST00000558768	C14orf37	Q86TY3	774 aa		11.95	□□□□□ -0.5
TRPM1-208	ENST00000558768	CCAR2	Q8N163	923 aa	Known RBP	11.94	□□□□□ -0.5
TRPM1-208	ENST00000558768	NEFH	P12036	1026 aa		11.94	□□□□□ -0.5
TRPM1-208	ENST00000558768	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
TRPM1-208	ENST00000558768	HSP90AB3P	Q58FF7	597 aa		11.93	□□□□□ -0.5
TRPM1-208	ENST00000558768	FOXD1	Q16676	465 aa		11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	ZNF592	Q92610	1267 aa		11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	PLIN1	O60240	522 aa		11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	RWDD1	Q9H446	243 aa	Predicted RBP	11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	CDR1	P51861	262 aa		11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	DHX37	Q8IY37	1157 aa	Known RBP	11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	PNISR	Q8TF01	805 aa	Known RBP	11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	FGD6	Q6ZV73	1430 aa		11.92	□□□□□ -0.5
TRPM1-208	ENST00000558768	BBX	Q8WY36	941 aa	Predicted RBP	11.91	□□□□□ -0.5
TRPM1-208	ENST00000558768	TIAM1	Q13009	1591 aa		11.91	□□□□□ -0.5
TRPM1-208	ENST00000558768	MAP3K1	Q13233	1512 aa		11.91	□□□□□ -0.5
TRPM1-208	ENST00000558768	KIF16B	Q96L93	1317 aa		11.91	□□□□□ -0.5
TRPM1-208	ENST00000558768	LEKR1	Q6ZMV7	388 aa		11.91	□□□□□ -0.5
TRPM1-208	ENST00000558768	NAP1L2	Q9ULW6	460 aa	Predicted RBP	11.91	□□□□□ -0.5
TRPM1-208	ENST00000558768	GOLGA6L19	H0YKK7	550 aa		11.9	□□□□□ -0.5
TRPM1-208	ENST00000558768	CDCA8	Q53HL2	280 aa		11.9	□□□□□ -0.5
TRPM1-208	ENST00000558768	BRD4	O60885	1362 aa	Predicted RBP	11.9	□□□□□ -0.5
TRPM1-208	ENST00000558768	ARID3C	A6NKF2	412 aa		11.9	□□□□□ -0.5
TRPM1-208	ENST00000558768	KNSTRN	Q9Y448	316 aa		11.9	□□□□□ -0.5
TRPM1-208	ENST00000558768	PDCL3	Q9H2J4	239 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	KIF3A	Q9Y496	699 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	AAMP	Q13685	434 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	MAPK8IP3	Q9UPT6	1336 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	DCTN1	Q14203	1278 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	HFM1	A2PYH4	1435 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	AEBP1	Q8IUX7	1158 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	CHMP5	Q9NZZ3	219 aa		11.89	□□□□□ -0.51
TRPM1-208	ENST00000558768	AK7	Q96M32	723 aa		11.88	□□□□□ -0.51
TRPM1-208	ENST00000558768	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.88	□□□□□ -0.51
TRPM1-208	ENST00000558768	MFAP1	P55081	439 aa	Known RBP	11.88	□□□□□ -0.51
TRPM1-208	ENST00000558768	MNS1	Q8NEH6	495 aa		11.88	□□□□□ -0.51
TRPM1-208	ENST00000558768	CCDC39	Q9UFE4	941 aa		11.88	□□□□□ -0.51
TRPM1-208	ENST00000558768	KIAA1211	Q6ZU35	1233 aa		11.87	□□□□□ -0.51
TRPM1-208	ENST00000558768	ISY1	Q9ULR0	285 aa	Known RBP	11.87	□□□□□ -0.51
TRPM1-208	ENST00000558768	BECN2	A8MW95	431 aa		11.87	□□□□□ -0.51
TRPM1-208	ENST00000558768	CC2D1B	Q5T0F9	858 aa	Known RBP	11.87	□□□□□ -0.51
TRPM1-208	ENST00000558768	PMFBP1	Q8TBY8	1022 aa		11.87	□□□□□ -0.51
TRPM1-208	ENST00000558768	USP47	Q96K76	1375 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	HSP90B1	P14625	803 aa	Known RBP	11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	ATP6V1D	Q9Y5K8	247 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	RNF123	Q5XPI4	1314 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	ST18	O60284	1047 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	FHOD3	Q2V2M9	1422 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	NCOA1	Q15788	1441 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	GOLGA2	Q08379	1002 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	HOMER1	Q86YM7	354 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	DYDC1	Q8WWB3	177 aa		11.86	□□□□□ -0.51
TRPM1-208	ENST00000558768	U2SURP	O15042	1029 aa	Known RBP	11.85	□□□□□ -0.51
TRPM1-208	ENST00000558768	MEX3C	Q5U5Q3	659 aa	Known RBP	11.85	□□□□□ -0.51
TRPM1-208	ENST00000558768	MAPK8IP2	Q13387	824 aa	Predicted RBP	11.85	□□□□□ -0.51
TRPM1-208	ENST00000558768	NEUROD2	Q15784	382 aa		11.85	□□□□□ -0.51
TRPM1-208	ENST00000558768	ERCC4	Q92889	916 aa	Predicted RBP	11.85	□□□□□ -0.51
TRPM1-208	ENST00000558768	RUFY1	Q96T51	708 aa		11.85	□□□□□ -0.51
TRPM1-208	ENST00000558768	NASP	P49321	788 aa	Predicted RBP	11.84	□□□□□ -0.51
TRPM1-208	ENST00000558768	PDCL2	Q8N4E4	241 aa		11.84	□□□□□ -0.51
TRPM1-208	ENST00000558768	CALCOCO1	Q9P1Z2	691 aa		11.84	□□□□□ -0.51
TRPM1-208	ENST00000558768	BRD2	P25440	801 aa	Known RBP	11.84	□□□□□ -0.51
TRPM1-208	ENST00000558768	TSR1	Q2NL82	804 aa	Known RBP	11.83	□□□□□ -0.52
TRPM1-208	ENST00000558768	TAOK2	Q9UL54	1235 aa		11.83	□□□□□ -0.52
TRPM1-208	ENST00000558768	TPM1	P09493	284 aa		11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	IRX3	P78415	501 aa	Predicted RBP	11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	GIMAP7	Q8NHV1	300 aa		11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	POGK	Q9P215	609 aa		11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	TOP2B	Q02880	1626 aa		11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	OS9	Q13438	667 aa	Predicted RBP	11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	IFT57	Q9NWB7	429 aa		11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	ESPN	B1AK53	854 aa		11.82	□□□□□ -0.52
TRPM1-208	ENST00000558768	IGF1R	P08069	1367 aa		11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	IPO8	O15397	1037 aa	Known RBP	11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	CCDC173	Q0VFZ6	552 aa		11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	CLCN1	P35523	988 aa		11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	CEP89	Q96ST8	783 aa		11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	PLCD4	Q9BRC7	762 aa		11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	CHMP4A	Q9BY43	222 aa		11.81	□□□□□ -0.52
TRPM1-208	ENST00000558768	ATAD2B	Q9ULI0	1458 aa		11.81	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms