RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 GOLGA6L6A8MZA4 724 aa10.38□□□□□ -0.75
SYNE2-220ENST00000555612 CCDC144AA2RUR9 1427 aa10.37□□□□□ -0.75
SYNE2-220ENST00000555612 PSME1Q06323 249 aa10.37□□□□□ -0.75
SYNE2-220ENST00000555612 LMOD3Q0VAK6 560 aa10.37□□□□□ -0.75
SYNE2-220ENST00000555612 HDAC5Q9UQL6 1122 aa10.36□□□□□ -0.75
SYNE2-220ENST00000555612 GPATCH3Q96I76 525 aa10.35□□□□□ -0.75
SYNE2-220ENST00000555612 TOMM22Q9NS69 142 aa10.35□□□□□ -0.75
SYNE2-220ENST00000555612 NGEFQ8N5V2 710 aa10.35□□□□□ -0.75
SYNE2-220ENST00000555612 AMER1Q5JTC6 1135 aaPredicted RBP10.35□□□□□ -0.75
SYNE2-220ENST00000555612 ERICH6BQ5W0A0 696 aa10.35□□□□□ -0.75
SYNE2-220ENST00000555612 ATF3P18847 181 aa10.35□□□□□ -0.75
SYNE2-220ENST00000555612 CLUAP1Q96AJ1 413 aa10.35□□□□□ -0.75
SYNE2-220ENST00000555612 TRIM6-TRIM34B2RNG4 842 aa10.34□□□□□ -0.75
SYNE2-220ENST00000555612 RRP7AQ9Y3A4 280 aaKnown RBP10.34□□□□□ -0.75
SYNE2-220ENST00000555612 UACAQ9BZF9 1416 aa10.34□□□□□ -0.75
SYNE2-220ENST00000555612 TTC5Q8N0Z6 440 aa10.34□□□□□ -0.75
SYNE2-220ENST00000555612 RWDD1Q9H446 243 aaPredicted RBP10.34□□□□□ -0.75
SYNE2-220ENST00000555612 CFAP44Q96MT7 982 aa10.34□□□□□ -0.75
SYNE2-220ENST00000555612 EVC2Q86UK5 1308 aa10.34□□□□□ -0.75
SYNE2-220ENST00000555612 TEFQ10587 303 aa10.34□□□□□ -0.75
SYNE2-220ENST00000555612 HMMRO75330 724 aa10.33□□□□□ -0.76
SYNE2-220ENST00000555612 ELL2O00472 640 aaPredicted RBP10.33□□□□□ -0.76
SYNE2-220ENST00000555612 NRDCO43847 1150 aa10.33□□□□□ -0.76
SYNE2-220ENST00000555612 RCAN3Q9UKA8 241 aa10.33□□□□□ -0.76
SYNE2-220ENST00000555612 HSP90B1P14625 803 aaKnown RBP10.32□□□□□ -0.76
SYNE2-220ENST00000555612 GAPVD1Q14C86 1478 aa10.32□□□□□ -0.76
SYNE2-220ENST00000555612 ST20-MTHFSA0A0A6YYL1 179 aa10.31□□□□□ -0.76
SYNE2-220ENST00000555612 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.31□□□□□ -0.76
SYNE2-220ENST00000555612 RAD54L2Q9Y4B4 1467 aa10.31□□□□□ -0.76
SYNE2-220ENST00000555612 PANK3Q9H999 370 aa10.31□□□□□ -0.76
SYNE2-220ENST00000555612 VPS53Q5VIR6 699 aa10.3□□□□□ -0.76
SYNE2-220ENST00000555612 DHX57Q6P158 1386 aaKnown RBP10.3□□□□□ -0.76
SYNE2-220ENST00000555612 AQRO60306 1485 aaKnown RBP eCLIP10.3□□□□□ -0.76
SYNE2-220ENST00000555612 EIF2S2P20042 333 aaKnown RBP10.3□□□□□ -0.76
SYNE2-220ENST00000555612 CGNL1Q0VF96 1302 aa10.3□□□□□ -0.76
SYNE2-220ENST00000555612 CENPJQ9HC77 1338 aaPredicted RBP10.29□□□□□ -0.76
SYNE2-220ENST00000555612 NUTM2GQ5VZR2 741 aa10.29□□□□□ -0.76
SYNE2-220ENST00000555612 NLRP13Q86W25 1043 aa10.29□□□□□ -0.76
SYNE2-220ENST00000555612 FBXW7Q969H0 707 aa10.28□□□□□ -0.76
SYNE2-220ENST00000555612 FGD5Q6ZNL6 1462 aa10.28□□□□□ -0.76
SYNE2-220ENST00000555612 RASSF8Q8NHQ8 419 aa10.28□□□□□ -0.76
SYNE2-220ENST00000555612 DRC7Q8IY82 874 aa10.28□□□□□ -0.76
SYNE2-220ENST00000555612 NOL8Q76FK4 1167 aaKnown RBP10.28□□□□□ -0.76
SYNE2-220ENST00000555612 RAD21O60216 631 aa10.27□□□□□ -0.77
SYNE2-220ENST00000555612 NECTIN2Q92692 538 aa10.27□□□□□ -0.77
SYNE2-220ENST00000555612 GLIPR1L2Q4G1C9 344 aa10.27□□□□□ -0.77
SYNE2-220ENST00000555612 NLRP2Q9NX02 1062 aa10.26□□□□□ -0.77
SYNE2-220ENST00000555612 PMFBP1Q8TBY8 1022 aa10.26□□□□□ -0.77
SYNE2-220ENST00000555612 MARCH6O60337 910 aa10.26□□□□□ -0.77
SYNE2-220ENST00000555612 NEXNQ0ZGT2 675 aa10.26□□□□□ -0.77
SYNE2-220ENST00000555612 MFAP1P55081 439 aaKnown RBP10.26□□□□□ -0.77
SYNE2-220ENST00000555612 USP35Q9P2H5 1018 aa10.26□□□□□ -0.77
SYNE2-220ENST00000555612 TRIM34Q9BYJ4 488 aa10.25□□□□□ -0.77
SYNE2-220ENST00000555612 RAPGEF4Q8WZA2 1011 aa10.25□□□□□ -0.77
SYNE2-220ENST00000555612 BCL2L13Q9BXK5 485 aa10.25□□□□□ -0.77
SYNE2-220ENST00000555612 PROSER2Q86WR7 435 aaPredicted RBP10.25□□□□□ -0.77
SYNE2-220ENST00000555612 NOP58Q9Y2X3 529 aaKnown RBP10.24□□□□□ -0.77
SYNE2-220ENST00000555612 NOL10Q9BSC4 688 aaKnown RBP10.24□□□□□ -0.77
SYNE2-220ENST00000555612 ZNF644Q9H582 1327 aaPredicted RBP10.24□□□□□ -0.77
SYNE2-220ENST00000555612 DCAF8L1A6NGE4 600 aa10.24□□□□□ -0.77
SYNE2-220ENST00000555612 RUSC2Q8N2Y8 1516 aa10.24□□□□□ -0.77
SYNE2-220ENST00000555612 HTATSF1O43719 755 aaKnown RBP10.23□□□□□ -0.77
SYNE2-220ENST00000555612 C9orf78Q9NZ63 289 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-220ENST00000555612 DIAPH1O60610 1272 aaKnown RBP10.23□□□□□ -0.77
SYNE2-220ENST00000555612 KIF15Q9NS87 1388 aa10.23□□□□□ -0.77
SYNE2-220ENST00000555612 VPS37DQ86XT2 251 aa10.23□□□□□ -0.77
SYNE2-220ENST00000555612 CTDP1Q9Y5B0 961 aaPredicted RBP10.23□□□□□ -0.77
SYNE2-220ENST00000555612 TXNDC2Q86VQ3 553 aa10.22□□□□□ -0.77
SYNE2-220ENST00000555612 AFAP1Q8N556 730 aa10.22□□□□□ -0.77
SYNE2-220ENST00000555612 KIF21BO75037 1637 aa10.22□□□□□ -0.77
SYNE2-220ENST00000555612 KIAA2012Q0VF49 1180 aa10.22□□□□□ -0.77
SYNE2-220ENST00000555612 ESCO1Q5FWF5 840 aa10.22□□□□□ -0.77
SYNE2-220ENST00000555612 NUTM2BA6NNL0 878 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-220ENST00000555612 NUTM2EB1AL46 878 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-220ENST00000555612 NUTM2AQ8IVF1 878 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-220ENST00000555612 CHAF1AQ13111 956 aaPredicted RBP10.22□□□□□ -0.77
SYNE2-220ENST00000555612 PDE4CQ08493 712 aa10.21□□□□□ -0.77
SYNE2-220ENST00000555612 RILPL2Q969X0 211 aa10.21□□□□□ -0.77
SYNE2-220ENST00000555612 MYBBP1AQ9BQG0 1328 aaKnown RBP10.21□□□□□ -0.78
SYNE2-220ENST00000555612 TCERG1O14776 1098 aaKnown RBP10.21□□□□□ -0.78
SYNE2-220ENST00000555612 PHLDB1Q86UU1 1377 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 NLRP6P59044 892 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 TMEM132EQ6IEE7 984 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 CREBRFQ8IUR6 639 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 IGF1RP08069 1367 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 AMOTL1Q8IY63 956 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 PRM3Q9NNZ6 103 aa10.21□□□□□ -0.78
SYNE2-220ENST00000555612 ERICH3Q5RHP9 1530 aa10.2□□□□□ -0.78
SYNE2-220ENST00000555612 SLKQ9H2G2 1235 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-220ENST00000555612 STRN4Q9NRL3 753 aa10.2□□□□□ -0.78
SYNE2-220ENST00000555612 PRDM2Q13029 1718 aa10.2□□□□□ -0.78
SYNE2-220ENST00000555612 RBM33Q96EV2 1170 aaKnown RBP10.2□□□□□ -0.78
SYNE2-220ENST00000555612 CABP2Q9NPB3 220 aa10.2□□□□□ -0.78
SYNE2-220ENST00000555612 PPP1R1BQ9UD71 204 aaPredicted RBP10.2□□□□□ -0.78
SYNE2-220ENST00000555612 CCDC34Q96HJ3 373 aa10.19□□□□□ -0.78
SYNE2-220ENST00000555612 FOXD4L1Q9NU39 408 aa10.19□□□□□ -0.78
SYNE2-220ENST00000555612 PRG4Q92954 1404 aaPredicted RBP10.19□□□□□ -0.78
SYNE2-220ENST00000555612 PIP4K2BP78356 416 aa10.19□□□□□ -0.78
SYNE2-220ENST00000555612 MYOM3Q5VTT5 1437 aa10.19□□□□□ -0.78
SYNE2-220ENST00000555612 USP47Q96K76 1375 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 79 ms