RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 RABGEF1Q9UJ41 708 aa12.13□□□□□ -0.47
LINC00643-203ENST00000555518 DCAF1Q9Y4B6 1507 aa12.12□□□□□ -0.47
LINC00643-203ENST00000555518 PCDHGA10Q9Y5H3 936 aa12.12□□□□□ -0.47
LINC00643-203ENST00000555518 LAPTM4BQ86VI4 370 aa12.1□□□□□ -0.47
LINC00643-203ENST00000555518 EPAS1Q99814 870 aa12.09□□□□□ -0.47
LINC00643-203ENST00000555518 ONECUT3O60422 494 aaPredicted RBP12.08□□□□□ -0.48
LINC00643-203ENST00000555518 ANKK1Q8NFD2 765 aa12.08□□□□□ -0.48
LINC00643-203ENST00000555518 CAMK2BQ13554 666 aa12.07□□□□□ -0.48
LINC00643-203ENST00000555518 NYAP1Q6ZVC0 841 aa12.05□□□□□ -0.48
LINC00643-203ENST00000555518 CADPS2Q86UW7 1296 aa12.04□□□□□ -0.48
LINC00643-203ENST00000555518 MYO15BQ96JP2 1530 aa12.02□□□□□ -0.48
LINC00643-203ENST00000555518 A0A0G2JS52 829 aa12.02□□□□□ -0.49
LINC00643-203ENST00000555518 COL9A1P20849 921 aa12.01□□□□□ -0.49
LINC00643-203ENST00000555518 PROX2Q3B8N5 592 aa12.01□□□□□ -0.49
LINC00643-203ENST00000555518 C6orf132Q5T0Z8 1188 aa11.99□□□□□ -0.49
LINC00643-203ENST00000555518 BBXQ8WY36 941 aaPredicted RBP11.99□□□□□ -0.49
LINC00643-203ENST00000555518 SOWAHBA6NEL2 793 aa11.98□□□□□ -0.49
LINC00643-203ENST00000555518 DPYSL4O14531 572 aa11.98□□□□□ -0.49
LINC00643-203ENST00000555518 KIAA1468Q9P260 1216 aa11.98□□□□□ -0.49
LINC00643-203ENST00000555518 ITGBL1O95965 494 aaPredicted RBP11.97□□□□□ -0.49
LINC00643-203ENST00000555518 ZFRQ96KR1 1074 aaKnown RBP11.96□□□□□ -0.49
LINC00643-203ENST00000555518 TRIM6-TRIM34B2RNG4 842 aa11.94□□□□□ -0.5
LINC00643-203ENST00000555518 NACADO15069 1562 aa11.93□□□□□ -0.5
LINC00643-203ENST00000555518 FAM98CQ17RN3 349 aaKnown RBP11.93□□□□□ -0.5
LINC00643-203ENST00000555518 IRX2Q9BZI1 471 aaPredicted RBP11.93□□□□□ -0.5
LINC00643-203ENST00000555518 SPDYE16A6NNV3 312 aaPredicted RBP11.92□□□□□ -0.5
LINC00643-203ENST00000555518 BCAMP50895 628 aa11.91□□□□□ -0.5
LINC00643-203ENST00000555518 PDIA6Q15084 440 aa11.89□□□□□ -0.51
LINC00643-203ENST00000555518 PACS2Q86VP3 889 aa11.89□□□□□ -0.51
LINC00643-203ENST00000555518 DDX12PQ92771 950 aa11.89□□□□□ -0.51
LINC00643-203ENST00000555518 EN1Q05925 392 aaPredicted RBP11.88□□□□□ -0.51
LINC00643-203ENST00000555518 RBM33Q96EV2 1170 aaKnown RBP11.88□□□□□ -0.51
LINC00643-203ENST00000555518 SPRYD3Q8NCJ5 442 aa11.87□□□□□ -0.51
LINC00643-203ENST00000555518 LRCH3Q96II8 777 aa11.87□□□□□ -0.51
LINC00643-203ENST00000555518 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.87□□□□□ -0.51
LINC00643-203ENST00000555518 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.87□□□□□ -0.51
LINC00643-203ENST00000555518 SEPT9Q9UHD8 586 aaPredicted RBP11.87□□□□□ -0.51
LINC00643-203ENST00000555518 TSR3Q9UJK0 312 aaKnown RBP11.87□□□□□ -0.51
LINC00643-203ENST00000555518 KCNC4Q03721 635 aa11.86□□□□□ -0.51
LINC00643-203ENST00000555518 NBR1Q14596 966 aa11.86□□□□□ -0.51
LINC00643-203ENST00000555518 CERKQ8TCT0 537 aa11.86□□□□□ -0.51
LINC00643-203ENST00000555518 MAP3K7O43318 606 aa11.85□□□□□ -0.51
LINC00643-203ENST00000555518 WBP1LQ9NX94 342 aa11.85□□□□□ -0.51
LINC00643-203ENST00000555518 RB1CC1Q8TDY2 1594 aa11.84□□□□□ -0.51
LINC00643-203ENST00000555518 ARIH1Q9Y4X5 557 aaPredicted RBP11.82□□□□□ -0.52
LINC00643-203ENST00000555518 E2F4Q16254 413 aa11.81□□□□□ -0.52
LINC00643-203ENST00000555518 HPS5Q9UPZ3 1129 aa11.81□□□□□ -0.52
LINC00643-203ENST00000555518 WDR70Q9NW82 654 aa11.79□□□□□ -0.52
LINC00643-203ENST00000555518 TSKSQ9UJT2 592 aa11.78□□□□□ -0.52
LINC00643-203ENST00000555518 PPP4CP60510 307 aa11.77□□□□□ -0.53
LINC00643-203ENST00000555518 TSR1Q2NL82 804 aaKnown RBP11.77□□□□□ -0.53
LINC00643-203ENST00000555518 PRSS12P56730 875 aa11.76□□□□□ -0.53
LINC00643-203ENST00000555518 CDCA7LQ96GN5 454 aa11.76□□□□□ -0.53
LINC00643-203ENST00000555518 SHROOM4Q9ULL8 1493 aa11.76□□□□□ -0.53
LINC00643-203ENST00000555518 NBPF26B4DH59 902 aa11.74□□□□□ -0.53
LINC00643-203ENST00000555518 HDGFP51858 240 aaKnown RBP11.73□□□□□ -0.53
LINC00643-203ENST00000555518 RBM27Q9P2N5 1060 aaKnown RBP11.73□□□□□ -0.53
LINC00643-203ENST00000555518 SCRIBQ14160 1630 aa11.72□□□□□ -0.53
LINC00643-203ENST00000555518 LAPTM4AQ15012 233 aa11.72□□□□□ -0.53
LINC00643-203ENST00000555518 AMER1Q5JTC6 1135 aaPredicted RBP11.72□□□□□ -0.53
LINC00643-203ENST00000555518 NECTIN2Q92692 538 aa11.72□□□□□ -0.53
LINC00643-203ENST00000555518 GRXCR2A6NFK2 248 aa11.69□□□□□ -0.54
LINC00643-203ENST00000555518 SAMD7Q7Z3H4 446 aa11.68□□□□□ -0.54
LINC00643-203ENST00000555518 TATDN2Q93075 761 aa11.68□□□□□ -0.54
LINC00643-203ENST00000555518 PNMA3Q9UL41 463 aa11.67□□□□□ -0.54
LINC00643-203ENST00000555518 OSBPP22059 807 aa11.64□□□□□ -0.55
LINC00643-203ENST00000555518 Q6ZNB5 142 aa11.64□□□□□ -0.55
LINC00643-203ENST00000555518 PAXIP1Q6ZW49 1069 aaPredicted RBP11.64□□□□□ -0.55
LINC00643-203ENST00000555518 IL21Q9HBE4 155 aa11.64□□□□□ -0.55
LINC00643-203ENST00000555518 UNC13AQ9UPW8 1703 aa11.63□□□□□ -0.55
LINC00643-203ENST00000555518 SMAPO00193 183 aa11.63□□□□□ -0.55
LINC00643-203ENST00000555518 SLC4A3P48751 1232 aa11.63□□□□□ -0.55
LINC00643-203ENST00000555518 TJAP1Q5JTD0 557 aa11.63□□□□□ -0.55
LINC00643-203ENST00000555518 CFAP44Q96MT7 982 aa11.63□□□□□ -0.55
LINC00643-203ENST00000555518 FAM198AQ9UFP1 575 aa11.62□□□□□ -0.55
LINC00643-203ENST00000555518 NUDT18Q6ZVK8 323 aa11.6□□□□□ -0.55
LINC00643-203ENST00000555518 MTRQ99707 1265 aa11.6□□□□□ -0.55
LINC00643-203ENST00000555518 PRIM1P49642 420 aaKnown RBP11.59□□□□□ -0.55
LINC00643-203ENST00000555518 SLF2Q8IX21 1173 aa11.58□□□□□ -0.56
LINC00643-203ENST00000555518 V9GY48 417 aaPredicted RBP11.57□□□□□ -0.56
LINC00643-203ENST00000555518 RNF40O75150 1001 aa11.56□□□□□ -0.56
LINC00643-203ENST00000555518 TTC13Q8NBP0 860 aa11.56□□□□□ -0.56
LINC00643-203ENST00000555518 PRR14Q9BWN1 585 aa11.56□□□□□ -0.56
LINC00643-203ENST00000555518 CDHR5Q9HBB8 845 aa11.56□□□□□ -0.56
LINC00643-203ENST00000555518 BICRAQ9NZM4 1560 aa11.55□□□□□ -0.56
LINC00643-203ENST00000555518 GGCXP38435 758 aa11.54□□□□□ -0.56
LINC00643-203ENST00000555518 C3orf80F5H4A9 247 aa11.53□□□□□ -0.56
LINC00643-203ENST00000555518 PPP1R18Q6NYC8 613 aa11.53□□□□□ -0.56
LINC00643-203ENST00000555518 PRKD2Q9BZL6 878 aa11.53□□□□□ -0.56
LINC00643-203ENST00000555518 GFRA3O60609 400 aa11.52□□□□□ -0.57
LINC00643-203ENST00000555518 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.52□□□□□ -0.57
LINC00643-203ENST00000555518 APLP1P51693 650 aa11.51□□□□□ -0.57
LINC00643-203ENST00000555518 PADI6Q6TGC4 694 aa11.51□□□□□ -0.57
LINC00643-203ENST00000555518 ARHGEF1Q92888 912 aaKnown RBP11.51□□□□□ -0.57
LINC00643-203ENST00000555518 RTN4Q9NQC3 1192 aaKnown RBP11.51□□□□□ -0.57
LINC00643-203ENST00000555518 NRG2O14511 850 aaPredicted RBP11.5□□□□□ -0.57
LINC00643-203ENST00000555518 NPDC1Q9NQX5 325 aaPredicted RBP11.5□□□□□ -0.57
LINC00643-203ENST00000555518 SWT1Q5T5J6 900 aaKnown RBP11.49□□□□□ -0.57
LINC00643-203ENST00000555518 TMUB1Q9BVT8 246 aa11.49□□□□□ -0.57
LINC00643-203ENST00000555518 TRAF7Q6Q0C0 670 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms