RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 YEATS2Q9ULM3 1422 aa12.41□□□□□ -0.42
ATXN3-219ENST00000553488 ARID4BQ4LE39 1312 aaPredicted RBP12.4□□□□□ -0.42
ATXN3-219ENST00000553488 FAM9AQ8IZU1 332 aaPredicted RBP12.4□□□□□ -0.42
ATXN3-219ENST00000553488 BMP2KQ9NSY1 1161 aaPredicted RBP12.4□□□□□ -0.42
ATXN3-219ENST00000553488 MAGI2Q86UL8 1455 aa12.4□□□□□ -0.43
ATXN3-219ENST00000553488 PELP1Q8IZL8 1130 aaKnown RBP12.39□□□□□ -0.43
ATXN3-219ENST00000553488 PREX1Q8TCU6 1659 aa12.38□□□□□ -0.43
ATXN3-219ENST00000553488 POGZQ7Z3K3 1410 aa12.38□□□□□ -0.43
ATXN3-219ENST00000553488 CDK13Q14004 1512 aaKnown RBP12.38□□□□□ -0.43
ATXN3-219ENST00000553488 ARHGEF12Q9NZN5 1544 aa12.38□□□□□ -0.43
ATXN3-219ENST00000553488 PCDHB8Q9UN66 801 aa12.38□□□□□ -0.43
ATXN3-219ENST00000553488 EEA1Q15075 1411 aa12.37□□□□□ -0.43
ATXN3-219ENST00000553488 MYO5CQ9NQX4 1742 aa12.37□□□□□ -0.43
ATXN3-219ENST00000553488 HSPA2P54652 639 aa12.36□□□□□ -0.43
ATXN3-219ENST00000553488 PKD2Q13563 968 aa12.36□□□□□ -0.43
ATXN3-219ENST00000553488 ZNF467Q7Z7K2 595 aaPredicted RBP12.36□□□□□ -0.43
ATXN3-219ENST00000553488 TTLL13PA6NNM8 815 aa12.35□□□□□ -0.43
ATXN3-219ENST00000553488 ATN1P54259 1190 aaPredicted RBP12.35□□□□□ -0.43
ATXN3-219ENST00000553488 STRCQ7RTU9 1775 aa12.34□□□□□ -0.43
ATXN3-219ENST00000553488 PLEKHD1A6NEE1 506 aa12.34□□□□□ -0.43
ATXN3-219ENST00000553488 PLCH2O75038 1416 aa12.33□□□□□ -0.44
ATXN3-219ENST00000553488 KDM5CP41229 1560 aa12.33□□□□□ -0.44
ATXN3-219ENST00000553488 KIF14Q15058 1648 aa12.33□□□□□ -0.44
ATXN3-219ENST00000553488 LRRIQ1Q96JM4 1722 aa12.32□□□□□ -0.44
ATXN3-219ENST00000553488 C9orf84Q5VXU9 1444 aa12.32□□□□□ -0.44
ATXN3-219ENST00000553488 SCAPERQ9BY12 1400 aa12.32□□□□□ -0.44
ATXN3-219ENST00000553488 RNF25Q96BH1 459 aaPredicted RBP12.31□□□□□ -0.44
ATXN3-219ENST00000553488 ATP10AO60312 1499 aa12.31□□□□□ -0.44
ATXN3-219ENST00000553488 SETD1BQ9UPS6 1966 aaKnown RBP12.3□□□□□ -0.44
ATXN3-219ENST00000553488 REREQ9P2R6 1566 aa12.3□□□□□ -0.44
ATXN3-219ENST00000553488 DIP2CQ9Y2E4 1556 aa12.3□□□□□ -0.44
ATXN3-219ENST00000553488 RANGAP1P46060 587 aaPredicted RBP12.29□□□□□ -0.44
ATXN3-219ENST00000553488 CERKQ8TCT0 537 aa12.29□□□□□ -0.44
ATXN3-219ENST00000553488 ABCA6Q8N139 1617 aa12.29□□□□□ -0.44
ATXN3-219ENST00000553488 CDC42BPBQ9Y5S2 1711 aa12.28□□□□□ -0.44
ATXN3-219ENST00000553488 ZNF518AQ6AHZ1 1483 aa12.27□□□□□ -0.44
ATXN3-219ENST00000553488 C3P01024 1663 aa12.27□□□□□ -0.45
ATXN3-219ENST00000553488 TMEM106CQ9BVX2 250 aa12.27□□□□□ -0.45
ATXN3-219ENST00000553488 MLECQ14165 292 aa12.26□□□□□ -0.45
ATXN3-219ENST00000553488 ARHGAP35Q9NRY4 1499 aa12.26□□□□□ -0.45
ATXN3-219ENST00000553488 FMN1Q68DA7 1419 aa12.25□□□□□ -0.45
ATXN3-219ENST00000553488 PREX2Q70Z35 1606 aa12.25□□□□□ -0.45
ATXN3-219ENST00000553488 ITSN2Q9NZM3 1697 aa12.25□□□□□ -0.45
ATXN3-219ENST00000553488 ARHGAP5Q13017 1502 aa12.24□□□□□ -0.45
ATXN3-219ENST00000553488 SLC39A7Q92504 469 aa12.24□□□□□ -0.45
ATXN3-219ENST00000553488 TRIM35Q9UPQ4 493 aa12.24□□□□□ -0.45
ATXN3-219ENST00000553488 ABCC1P33527 1531 aa12.23□□□□□ -0.45
ATXN3-219ENST00000553488 TROQ12816 1431 aaPredicted RBP12.23□□□□□ -0.45
ATXN3-219ENST00000553488 C7P10643 843 aa12.23□□□□□ -0.45
ATXN3-219ENST00000553488 PSEN1P49768 467 aa12.23□□□□□ -0.45
ATXN3-219ENST00000553488 PDAP1Q13442 181 aaKnown RBP12.23□□□□□ -0.45
ATXN3-219ENST00000553488 AGLP35573 1532 aa12.22□□□□□ -0.45
ATXN3-219ENST00000553488 UHRF1BP1Q6BDS2 1440 aa12.22□□□□□ -0.45
ATXN3-219ENST00000553488 MLH3Q9UHC1 1453 aa12.21□□□□□ -0.45
ATXN3-219ENST00000553488 KIDINS220Q9ULH0 1771 aa12.21□□□□□ -0.45
ATXN3-219ENST00000553488 POTEFA5A3E0 1075 aa12.21□□□□□ -0.45
ATXN3-219ENST00000553488 RIOK3O14730 519 aaKnown RBP12.21□□□□□ -0.45
ATXN3-219ENST00000553488 ECM2O94769 699 aaPredicted RBP12.21□□□□□ -0.45
ATXN3-219ENST00000553488 CEBPAP49715 358 aaPredicted RBP12.21□□□□□ -0.45
ATXN3-219ENST00000553488 METRNQ9UJH8 293 aa12.21□□□□□ -0.45
ATXN3-219ENST00000553488 CDC42BPAQ5VT25 1732 aa12.2□□□□□ -0.46
ATXN3-219ENST00000553488 LTBP4Q8N2S1 1624 aa12.2□□□□□ -0.46
ATXN3-219ENST00000553488 IER5LQ5T953 404 aa12.2□□□□□ -0.46
ATXN3-219ENST00000553488 EFCAB2Q5VUJ9 269 aa12.2□□□□□ -0.46
ATXN3-219ENST00000553488 SPATA31D1Q6ZQQ2 1576 aa12.19□□□□□ -0.46
ATXN3-219ENST00000553488 PTPRTO14522 1441 aa12.19□□□□□ -0.46
ATXN3-219ENST00000553488 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
ATXN3-219ENST00000553488 MROH2AA6NES4 1674 aa12.18□□□□□ -0.46
ATXN3-219ENST00000553488 CLIP1P30622 1438 aa12.18□□□□□ -0.46
ATXN3-219ENST00000553488 RGL2O15211 777 aa12.17□□□□□ -0.46
ATXN3-219ENST00000553488 AFAP1Q8N556 730 aa12.17□□□□□ -0.46
ATXN3-219ENST00000553488 TRAPPC8Q9Y2L5 1435 aa12.17□□□□□ -0.46
ATXN3-219ENST00000553488 LHX8Q68G74 356 aa12.16□□□□□ -0.46
ATXN3-219ENST00000553488 ILDR2Q71H61 639 aa12.16□□□□□ -0.46
ATXN3-219ENST00000553488 IQSEC2Q5JU85 1478 aa12.15□□□□□ -0.46
ATXN3-219ENST00000553488 NCOA1Q15788 1441 aa12.15□□□□□ -0.46
ATXN3-219ENST00000553488 ZNF142P52746 1687 aaPredicted RBP12.15□□□□□ -0.46
ATXN3-219ENST00000553488 DISP3Q9P2K9 1392 aa12.15□□□□□ -0.46
ATXN3-219ENST00000553488 VGFO15240 615 aaPredicted RBP12.14□□□□□ -0.47
ATXN3-219ENST00000553488 CDK11AQ9UQ88 783 aaPredicted RBP12.14□□□□□ -0.47
ATXN3-219ENST00000553488 CCDC18Q5T9S5 1454 aa12.14□□□□□ -0.47
ATXN3-219ENST00000553488 SAMD9LQ8IVG5 1584 aa12.13□□□□□ -0.47
ATXN3-219ENST00000553488 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-219ENST00000553488 COLQQ9Y215 455 aaPredicted RBP12.13□□□□□ -0.47
ATXN3-219ENST00000553488 CNTLNQ9NXG0 1405 aa12.12□□□□□ -0.47
ATXN3-219ENST00000553488 MYO3AQ8NEV4 1616 aa12.12□□□□□ -0.47
ATXN3-219ENST00000553488 PLXNC1O60486 1568 aa12.12□□□□□ -0.47
ATXN3-219ENST00000553488 CASKIN1Q8WXD9 1431 aa12.11□□□□□ -0.47
ATXN3-219ENST00000553488 CAMSAP1Q5T5Y3 1602 aa12.11□□□□□ -0.47
ATXN3-219ENST00000553488 INO80Q9ULG1 1556 aaPredicted RBP12.11□□□□□ -0.47
ATXN3-219ENST00000553488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.11□□□□□ -0.47
ATXN3-219ENST00000553488 ZFP91Q96JP5 570 aaPredicted RBP12.11□□□□□ -0.47
ATXN3-219ENST00000553488 ATP1B4Q9UN42 357 aaPredicted RBP12.11□□□□□ -0.47
ATXN3-219ENST00000553488 SUPT6HQ7KZ85 1726 aaKnown RBP12.11□□□□□ -0.47
ATXN3-219ENST00000553488 SYCP2Q9BX26 1530 aa12.11□□□□□ -0.47
ATXN3-219ENST00000553488 SOCS7O14512 581 aa12.1□□□□□ -0.47
ATXN3-219ENST00000553488 NPATQ14207 1427 aa12.1□□□□□ -0.47
ATXN3-219ENST00000553488 CLTCQ00610 1675 aaKnown RBP12.1□□□□□ -0.47
ATXN3-219ENST00000553488 POTEJP0CG39 1038 aa12.09□□□□□ -0.47
ATXN3-219ENST00000553488 UBTFP17480 764 aaKnown RBP12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms