RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 TSPY10P0CW01 314 aa10.21□□□□□ -0.78
LIMA1-213ENST00000552720 SAMD9LQ8IVG5 1584 aa10.2□□□□□ -0.78
LIMA1-213ENST00000552720 KDM5DQ9BY66 1539 aa10.19□□□□□ -0.78
LIMA1-213ENST00000552720 SMG6Q86US8 1419 aaKnown RBP10.19□□□□□ -0.78
LIMA1-213ENST00000552720 PNISRQ8TF01 805 aaKnown RBP10.19□□□□□ -0.78
LIMA1-213ENST00000552720 E9PCH4 1651 aa10.19□□□□□ -0.78
LIMA1-213ENST00000552720 FANCIQ9NVI1 1328 aa10.19□□□□□ -0.78
LIMA1-213ENST00000552720 ARHGEF12Q9NZN5 1544 aa10.19□□□□□ -0.78
LIMA1-213ENST00000552720 ARHGEF5Q12774 1597 aa10.18□□□□□ -0.78
LIMA1-213ENST00000552720 TMC1Q8TDI8 760 aa10.17□□□□□ -0.78
LIMA1-213ENST00000552720 NUDCQ9Y266 331 aa10.17□□□□□ -0.78
LIMA1-213ENST00000552720 PREX2Q70Z35 1606 aa10.17□□□□□ -0.78
LIMA1-213ENST00000552720 PTPRGP23470 1445 aa10.17□□□□□ -0.78
LIMA1-213ENST00000552720 FAM135AQ9P2D6 1515 aa10.17□□□□□ -0.78
LIMA1-213ENST00000552720 RGL3Q3MIN7 710 aa10.16□□□□□ -0.78
LIMA1-213ENST00000552720 TRPM1Q7Z4N2 1603 aa10.16□□□□□ -0.78
LIMA1-213ENST00000552720 ARID4BQ4LE39 1312 aaPredicted RBP10.16□□□□□ -0.78
LIMA1-213ENST00000552720 ROCK2O75116 1388 aaKnown RBP10.16□□□□□ -0.78
LIMA1-213ENST00000552720 MYO5CQ9NQX4 1742 aa10.16□□□□□ -0.78
LIMA1-213ENST00000552720 CCDC141Q6ZP82 1450 aa10.15□□□□□ -0.78
LIMA1-213ENST00000552720 SYCP2Q9BX26 1530 aa10.15□□□□□ -0.78
LIMA1-213ENST00000552720 TTC37Q6PGP7 1564 aa10.15□□□□□ -0.78
LIMA1-213ENST00000552720 NBPF1Q3BBV0 1214 aa10.15□□□□□ -0.78
LIMA1-213ENST00000552720 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.15□□□□□ -0.788e-10■■■□□ 17.1
LIMA1-213ENST00000552720 CHD1O14646 1710 aa10.15□□□□□ -0.79
LIMA1-213ENST00000552720 SALL2Q9Y467 1007 aaPredicted RBP10.14□□□□□ -0.79
LIMA1-213ENST00000552720 RNF123Q5XPI4 1314 aa10.13□□□□□ -0.79
LIMA1-213ENST00000552720 NPM3O75607 178 aaKnown RBP10.12□□□□□ -0.79
LIMA1-213ENST00000552720 LRPPRCP42704 1394 aaKnown RBP10.12□□□□□ -0.79
LIMA1-213ENST00000552720 PLA2R1Q13018 1463 aa10.12□□□□□ -0.79
LIMA1-213ENST00000552720 CCDC136Q96JN2 1154 aa10.12□□□□□ -0.79
LIMA1-213ENST00000552720 MYBBP1AQ9BQG0 1328 aaKnown RBP10.12□□□□□ -0.79
LIMA1-213ENST00000552720 CCDC144AA2RUR9 1427 aa10.12□□□□□ -0.79
LIMA1-213ENST00000552720 PRAG1Q86YV5 1406 aa10.12□□□□□ -0.79
LIMA1-213ENST00000552720 ARHGAP5Q13017 1502 aa10.12□□□□□ -0.79
LIMA1-213ENST00000552720 UNC13BO14795 1591 aa10.11□□□□□ -0.79
LIMA1-213ENST00000552720 ERCC6L2Q5T890 1561 aa10.11□□□□□ -0.79
LIMA1-213ENST00000552720 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.11□□□□□ -0.79
LIMA1-213ENST00000552720 A2MP01023 1474 aa10.11□□□□□ -0.79
LIMA1-213ENST00000552720 ERICH6Q7L0X2 663 aa10.11□□□□□ -0.79
LIMA1-213ENST00000552720 BRD4O60885 1362 aaPredicted RBP10.1□□□□□ -0.79
LIMA1-213ENST00000552720 PLEKHH2Q8IVE3 1493 aa10.1□□□□□ -0.79
LIMA1-213ENST00000552720 DISP3Q9P2K9 1392 aa10.09□□□□□ -0.79
LIMA1-213ENST00000552720 RALBP1Q15311 655 aa10.09□□□□□ -0.79
LIMA1-213ENST00000552720 IQGAP3Q86VI3 1631 aa10.08□□□□□ -0.8
LIMA1-213ENST00000552720 PER1O15534 1290 aaPredicted RBP10.08□□□□□ -0.8
LIMA1-213ENST00000552720 CC2D1BQ5T0F9 858 aaKnown RBP10.08□□□□□ -0.8
LIMA1-213ENST00000552720 MAST1Q9Y2H9 1570 aa10.08□□□□□ -0.8
LIMA1-213ENST00000552720 PARD3Q8TEW0 1356 aa10.07□□□□□ -0.8
LIMA1-213ENST00000552720 PRDM15P57071 1507 aaPredicted RBP10.07□□□□□ -0.8
LIMA1-213ENST00000552720 KTN1Q86UP2 1357 aaKnown RBP10.06□□□□□ -0.8
LIMA1-213ENST00000552720 CDCA7LQ96GN5 454 aa10.06□□□□□ -0.8
LIMA1-213ENST00000552720 TESK2Q96S53 571 aa10.06□□□□□ -0.8
LIMA1-213ENST00000552720 COL17A1Q9UMD9 1497 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-213ENST00000552720 PAK3O75914 559 aaPredicted RBP10.06□□□□□ -0.8
LIMA1-213ENST00000552720 NLRP13Q86W25 1043 aa10.06□□□□□ -0.8
LIMA1-213ENST00000552720 EXOC6Q8TAG9 804 aa10.06□□□□□ -0.8
LIMA1-213ENST00000552720 PLXNC1O60486 1568 aa10.05□□□□□ -0.8
LIMA1-213ENST00000552720 RRP1P56182 461 aaKnown RBP10.05□□□□□ -0.8
LIMA1-213ENST00000552720 RSPH4AQ5TD94 716 aa10.05□□□□□ -0.8
LIMA1-213ENST00000552720 SHROOM2Q13796 1616 aa10.05□□□□□ -0.8
LIMA1-213ENST00000552720 GPRASP1Q5JY77 1395 aa10.05□□□□□ -0.8
LIMA1-213ENST00000552720 PANK3Q9H999 370 aa10.05□□□□□ -0.8
LIMA1-213ENST00000552720 BCL11AQ9H165 835 aa10.04□□□□□ -0.8
LIMA1-213ENST00000552720 LAMC1P11047 1609 aa10.04□□□□□ -0.8
LIMA1-213ENST00000552720 RCAN3Q9UKA8 241 aa10.04□□□□□ -0.8
LIMA1-213ENST00000552720 ERBINQ96RT1 1412 aa10.03□□□□□ -0.8
LIMA1-213ENST00000552720 ABCC2Q92887 1545 aa10.03□□□□□ -0.8
LIMA1-213ENST00000552720 EIF2AK4Q9P2K8 1649 aaKnown RBP10.02□□□□□ -0.81
LIMA1-213ENST00000552720 DUOX2Q9NRD8 1548 aa10.02□□□□□ -0.81
LIMA1-213ENST00000552720 ZCCHC11Q5TAX3 1644 aaKnown RBP10.02□□□□□ -0.81
LIMA1-213ENST00000552720 RNF17Q9BXT8 1623 aaKnown RBP10.02□□□□□ -0.81
LIMA1-213ENST00000552720 PLIN1O60240 522 aa10.01□□□□□ -0.81
LIMA1-213ENST00000552720 NOP58Q9Y2X3 529 aaKnown RBP10.01□□□□□ -0.81
LIMA1-213ENST00000552720 MAGI2Q86UL8 1455 aa10.01□□□□□ -0.81
LIMA1-213ENST00000552720 TRAPPC8Q9Y2L5 1435 aa10□□□□□ -0.81
LIMA1-213ENST00000552720 NBR1Q14596 966 aa10□□□□□ -0.81
LIMA1-213ENST00000552720 TMF1P82094 1093 aa9.99□□□□□ -0.81
LIMA1-213ENST00000552720 SKAP1Q86WV1 359 aa9.99□□□□□ -0.81
LIMA1-213ENST00000552720 MADDQ8WXG6 1647 aa9.99□□□□□ -0.81
LIMA1-213ENST00000552720 IQGAP1P46940 1657 aa9.99□□□□□ -0.81
LIMA1-213ENST00000552720 ATP10AO60312 1499 aa9.98□□□□□ -0.81
LIMA1-213ENST00000552720 ABCC1P33527 1531 aa9.98□□□□□ -0.81
LIMA1-213ENST00000552720 BLMP54132 1417 aaPredicted RBP9.98□□□□□ -0.81
LIMA1-213ENST00000552720 PLCH2O75038 1416 aa9.98□□□□□ -0.81
LIMA1-213ENST00000552720 CEP152O94986 1710 aa9.98□□□□□ -0.81
LIMA1-213ENST00000552720 SPHKAPQ2M3C7 1700 aa9.98□□□□□ -0.81
LIMA1-213ENST00000552720 WDR7Q9Y4E6 1490 aa9.97□□□□□ -0.81
LIMA1-213ENST00000552720 AFAP1Q8N556 730 aa9.97□□□□□ -0.81
LIMA1-213ENST00000552720 ADAMTS8Q9UP79 889 aa9.97□□□□□ -0.81
LIMA1-213ENST00000552720 PDE3BQ13370 1112 aa9.97□□□□□ -0.81
LIMA1-213ENST00000552720 NCBP3Q53F19 620 aaKnown RBP9.97□□□□□ -0.81
LIMA1-213ENST00000552720 CLTCL1P53675 1640 aa9.96□□□□□ -0.81
LIMA1-213ENST00000552720 ANP32AP39687 249 aaKnown RBP9.96□□□□□ -0.81
LIMA1-213ENST00000552720 NPM2Q86SE8 214 aaKnown RBP9.96□□□□□ -0.81
LIMA1-213ENST00000552720 IPO9Q96P70 1041 aaKnown RBP9.96□□□□□ -0.81
LIMA1-213ENST00000552720 EFCAB2Q5VUJ9 269 aa9.96□□□□□ -0.82
LIMA1-213ENST00000552720 WASHC2CQ9Y4E1 1318 aa9.95□□□□□ -0.82
LIMA1-213ENST00000552720 ZMYM4Q5VZL5 1548 aa9.95□□□□□ -0.82
LIMA1-213ENST00000552720 CRBNQ96SW2 442 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms