RNA–Protein interactions for RNA: ENST00000551642.1

DEPDC4-210, Transcript of DEP domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene DEPDC4, Length 1,033 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-210ENST00000551642 EVI5O60447 810 aa12.93□□□□□ -0.34
DEPDC4-210ENST00000551642 PPP4R3BQ5MIZ7 849 aa12.93□□□□□ -0.34
DEPDC4-210ENST00000551642 POTEEQ6S8J3 1075 aa12.92□□□□□ -0.34
DEPDC4-210ENST00000551642 CHD1O14646 1710 aa12.91□□□□□ -0.34
DEPDC4-210ENST00000551642 MMRN1Q13201 1228 aa12.9□□□□□ -0.34
DEPDC4-210ENST00000551642 ARHGAP33O14559 1287 aa12.88□□□□□ -0.35
DEPDC4-210ENST00000551642 FOSBP53539 338 aa12.88□□□□□ -0.35
DEPDC4-210ENST00000551642 LSM11P83369 360 aaKnown RBP eCLIP12.88□□□□□ -0.35
DEPDC4-210ENST00000551642 URB2Q14146 1524 aaKnown RBP12.88□□□□□ -0.35
DEPDC4-210ENST00000551642 ZNF608Q9ULD9 1512 aaPredicted RBP12.88□□□□□ -0.35
DEPDC4-210ENST00000551642 JPH4Q96JJ6 628 aa12.87□□□□□ -0.35
DEPDC4-210ENST00000551642 WDR70Q9NW82 654 aa12.87□□□□□ -0.35
DEPDC4-210ENST00000551642 FANCD2Q9BXW9 1451 aa12.86□□□□□ -0.35
DEPDC4-210ENST00000551642 E2F4Q16254 413 aa12.85□□□□□ -0.35
DEPDC4-210ENST00000551642 ZNF454Q8N9F8 522 aa12.85□□□□□ -0.35
DEPDC4-210ENST00000551642 ARIH1Q9Y4X5 557 aaPredicted RBP12.85□□□□□ -0.35
DEPDC4-210ENST00000551642 PTGER2P43116 358 aa12.84□□□□□ -0.35
DEPDC4-210ENST00000551642 TSHZ2Q9NRE2 1034 aa12.84□□□□□ -0.35
DEPDC4-210ENST00000551642 DPYSL4O14531 572 aa12.83□□□□□ -0.36
DEPDC4-210ENST00000551642 AXIN2Q9Y2T1 843 aa12.83□□□□□ -0.36
DEPDC4-210ENST00000551642 BCL2L12Q9HB09 334 aa12.82□□□□□ -0.36
DEPDC4-210ENST00000551642 RSF1Q96T23 1441 aaPredicted RBP12.81□□□□□ -0.36
DEPDC4-210ENST00000551642 PLCB2Q00722 1185 aa12.81□□□□□ -0.36
DEPDC4-210ENST00000551642 ANKRD13DQ6ZTN6 518 aa12.81□□□□□ -0.36
DEPDC4-210ENST00000551642 TK2O00142 265 aa12.79□□□□□ -0.36
DEPDC4-210ENST00000551642 ZDHHC16Q969W1 377 aa12.79□□□□□ -0.36
DEPDC4-210ENST00000551642 PHF14O94880 888 aa12.78□□□□□ -0.36
DEPDC4-210ENST00000551642 KCNH8Q96L42 1107 aa12.78□□□□□ -0.36
DEPDC4-210ENST00000551642 SPDYE16A6NNV3 312 aaPredicted RBP12.77□□□□□ -0.37
DEPDC4-210ENST00000551642 PSEN2P49810 448 aa12.77□□□□□ -0.37
DEPDC4-210ENST00000551642 PDIA6Q15084 440 aa12.77□□□□□ -0.37
DEPDC4-210ENST00000551642 PCDHGA10Q9Y5H3 936 aa12.76□□□□□ -0.37
DEPDC4-210ENST00000551642 EIF4G3O43432 1585 aaKnown RBP12.76□□□□□ -0.37
DEPDC4-210ENST00000551642 MROH2BQ7Z745 1585 aa12.75□□□□□ -0.37
DEPDC4-210ENST00000551642 FBXW7Q969H0 707 aa12.75□□□□□ -0.37
DEPDC4-210ENST00000551642 PTPREP23469 700 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 DMRTA1Q5VZB9 504 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 ADGRD1Q6QNK2 874 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 KCNK17Q96T54 332 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 EPAS1Q99814 870 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 SLC4A5Q9BY07 1137 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 MYT1LQ9UL68 1186 aa12.74□□□□□ -0.37
DEPDC4-210ENST00000551642 TYW1BQ6NUM6 668 aa12.73□□□□□ -0.37
DEPDC4-210ENST00000551642 ADAM33Q9BZ11 813 aa12.73□□□□□ -0.37
DEPDC4-210ENST00000551642 IFT140Q96RY7 1462 aa12.71□□□□□ -0.38
DEPDC4-210ENST00000551642 RNF166Q96A37 237 aaPredicted RBP12.7□□□□□ -0.38
DEPDC4-210ENST00000551642 HRO43593 1189 aa12.69□□□□□ -0.38
DEPDC4-210ENST00000551642 CFTRP13569 1480 aa12.68□□□□□ -0.38
DEPDC4-210ENST00000551642 CLASP1Q7Z460 1538 aa12.67□□□□□ -0.38
DEPDC4-210ENST00000551642 KIF13AQ9H1H9 1805 aa12.67□□□□□ -0.38
DEPDC4-210ENST00000551642 VPS9D1Q9Y2B5 631 aa12.66□□□□□ -0.38
DEPDC4-210ENST00000551642 ARHGEF1Q92888 912 aaKnown RBP12.65□□□□□ -0.38
DEPDC4-210ENST00000551642 ZBED2Q9BTP6 218 aa12.65□□□□□ -0.38
DEPDC4-210ENST00000551642 PPP1R3GB7ZBB8 358 aa12.64□□□□□ -0.39
DEPDC4-210ENST00000551642 DDX12PQ92771 950 aa12.64□□□□□ -0.39
DEPDC4-210ENST00000551642 C6orf132Q5T0Z8 1188 aa12.61□□□□□ -0.39
DEPDC4-210ENST00000551642 PRDM2Q13029 1718 aa12.61□□□□□ -0.39
DEPDC4-210ENST00000551642 AQRO60306 1485 aaKnown RBP eCLIP12.6□□□□□ -0.39
DEPDC4-210ENST00000551642 EN1Q05925 392 aaPredicted RBP12.6□□□□□ -0.39
DEPDC4-210ENST00000551642 P3H3Q8IVL6 736 aa12.6□□□□□ -0.39
DEPDC4-210ENST00000551642 KCNV2Q8TDN2 545 aa12.6□□□□□ -0.39
DEPDC4-210ENST00000551642 WIZO95785 1651 aa12.6□□□□□ -0.39
DEPDC4-210ENST00000551642 BHMG1C9JSJ3 638 aaPredicted RBP12.59□□□□□ -0.39
DEPDC4-210ENST00000551642 NBR1Q14596 966 aa12.59□□□□□ -0.39
DEPDC4-210ENST00000551642 ONECUT3O60422 494 aaPredicted RBP12.57□□□□□ -0.4
DEPDC4-210ENST00000551642 COL9A1P20849 921 aa12.57□□□□□ -0.4
DEPDC4-210ENST00000551642 TARBP1Q13395 1621 aaKnown RBP12.57□□□□□ -0.4
DEPDC4-210ENST00000551642 STAC3Q96MF2 364 aa12.56□□□□□ -0.4
DEPDC4-210ENST00000551642 TOPBP1Q92547 1522 aa12.55□□□□□ -0.4
DEPDC4-210ENST00000551642 GAPVD1Q14C86 1478 aa12.54□□□□□ -0.4
DEPDC4-210ENST00000551642 HAP1P54257 671 aaPredicted RBP12.54□□□□□ -0.4
DEPDC4-210ENST00000551642 RBM33Q96EV2 1170 aaKnown RBP12.54□□□□□ -0.4
DEPDC4-210ENST00000551642 ERCC6L2Q5T890 1561 aa12.54□□□□□ -0.4
DEPDC4-210ENST00000551642 GRXCR2A6NFK2 248 aa12.53□□□□□ -0.4
DEPDC4-210ENST00000551642 RABGEF1Q9UJ41 708 aa12.53□□□□□ -0.4
DEPDC4-210ENST00000551642 HECW2Q9P2P5 1572 aa12.52□□□□□ -0.4
DEPDC4-210ENST00000551642 MAP3K7O43318 606 aa12.52□□□□□ -0.41
DEPDC4-210ENST00000551642 OSBPP22059 807 aa12.52□□□□□ -0.41
DEPDC4-210ENST00000551642 NBPF3Q9H094 633 aa12.51□□□□□ -0.41
DEPDC4-210ENST00000551642 PROX2Q3B8N5 592 aa12.5□□□□□ -0.41
DEPDC4-210ENST00000551642 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
DEPDC4-210ENST00000551642 PRIM1P49642 420 aaKnown RBP12.49□□□□□ -0.41
DEPDC4-210ENST00000551642 TSR1Q2NL82 804 aaKnown RBP12.49□□□□□ -0.41
DEPDC4-210ENST00000551642 CERKQ8TCT0 537 aa12.49□□□□□ -0.41
DEPDC4-210ENST00000551642 MRPL50Q8N5N7 158 aaKnown RBP12.48□□□□□ -0.41
DEPDC4-210ENST00000551642 FBXO41Q8TF61 875 aa12.48□□□□□ -0.41
DEPDC4-210ENST00000551642 TRIM6-TRIM34B2RNG4 842 aa12.47□□□□□ -0.41
DEPDC4-210ENST00000551642 HCSTQ9UBK5 93 aa12.47□□□□□ -0.41
DEPDC4-210ENST00000551642 LAPTM4BQ86VI4 370 aa12.46□□□□□ -0.41
DEPDC4-210ENST00000551642 LMTK3Q96Q04 1460 aa12.46□□□□□ -0.42
DEPDC4-210ENST00000551642 VSIG10Q8N0Z9 540 aa12.44□□□□□ -0.42
DEPDC4-210ENST00000551642 KIAA1468Q9P260 1216 aa12.44□□□□□ -0.42
DEPDC4-210ENST00000551642 KDM2AQ9Y2K7 1162 aa12.44□□□□□ -0.42
DEPDC4-210ENST00000551642 SNAPC4Q5SXM2 1469 aa12.43□□□□□ -0.42
DEPDC4-210ENST00000551642 KCTD12Q96CX2 325 aaKnown RBP12.43□□□□□ -0.42
DEPDC4-210ENST00000551642 GOLGA8CPA6NN73 597 aa12.42□□□□□ -0.42
DEPDC4-210ENST00000551642 MLLT3P42568 568 aaPredicted RBP12.42□□□□□ -0.42
DEPDC4-210ENST00000551642 DNMBPQ6XZF7 1577 aa12.41□□□□□ -0.42
DEPDC4-210ENST00000551642 KDM6BO15054 1643 aa12.4□□□□□ -0.42
DEPDC4-210ENST00000551642 PRSS12P56730 875 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms