RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 PREX2Q70Z35 1606 aa11.75□□□□□ -0.53
TDP1-204ENST00000545686 UNC13BO14795 1591 aa11.75□□□□□ -0.53
TDP1-204ENST00000545686 ZNF326Q5BKZ1 582 aaKnown RBP11.75□□□□□ -0.53
TDP1-204ENST00000545686 IPO9Q96P70 1041 aaKnown RBP11.75□□□□□ -0.53
TDP1-204ENST00000545686 EIF2AK4Q9P2K8 1649 aaKnown RBP11.74□□□□□ -0.53
TDP1-204ENST00000545686 CDC42BPBQ9Y5S2 1711 aa11.74□□□□□ -0.53
TDP1-204ENST00000545686 FAM135AQ9P2D6 1515 aa11.73□□□□□ -0.53
TDP1-204ENST00000545686 MAST1Q9Y2H9 1570 aa11.73□□□□□ -0.53
TDP1-204ENST00000545686 PARD3Q8TEW0 1356 aa11.73□□□□□ -0.53
TDP1-204ENST00000545686 DEKP35659 375 aaKnown RBP11.72□□□□□ -0.53
TDP1-204ENST00000545686 POLR3GLQ9BT43 218 aa11.72□□□□□ -0.53
TDP1-204ENST00000545686 PDE3BQ13370 1112 aa11.72□□□□□ -0.53
TDP1-204ENST00000545686 ZNF777Q9ULD5 760 aaPredicted RBP11.72□□□□□ -0.53
TDP1-204ENST00000545686 PRDM15P57071 1507 aaPredicted RBP11.72□□□□□ -0.53
TDP1-204ENST00000545686 RRP1P56182 461 aaKnown RBP11.71□□□□□ -0.53
TDP1-204ENST00000545686 PRAG1Q86YV5 1406 aa11.71□□□□□ -0.53
TDP1-204ENST00000545686 CCDC141Q6ZP82 1450 aa11.71□□□□□ -0.53
TDP1-204ENST00000545686 SAMD9LQ8IVG5 1584 aa11.71□□□□□ -0.53
TDP1-204ENST00000545686 ATP10BO94823 1461 aa11.71□□□□□ -0.54
TDP1-204ENST00000545686 PLEKHH2Q8IVE3 1493 aa11.71□□□□□ -0.54
TDP1-204ENST00000545686 GPRASP1Q5JY77 1395 aa11.7□□□□□ -0.54
TDP1-204ENST00000545686 COL17A1Q9UMD9 1497 aaPredicted RBP11.7□□□□□ -0.54
TDP1-204ENST00000545686 ST20-MTHFSA0A0A6YYL1 179 aa11.7□□□□□ -0.54
TDP1-204ENST00000545686 PAK3O75914 559 aaPredicted RBP11.7□□□□□ -0.54
TDP1-204ENST00000545686 NLRP13Q86W25 1043 aa11.7□□□□□ -0.54
TDP1-204ENST00000545686 IQGAP3Q86VI3 1631 aa11.7□□□□□ -0.54
TDP1-204ENST00000545686 WASHC2CQ9Y4E1 1318 aa11.69□□□□□ -0.54
TDP1-204ENST00000545686 RNF17Q9BXT8 1623 aaKnown RBP11.69□□□□□ -0.54
TDP1-204ENST00000545686 PLXNC1O60486 1568 aa11.69□□□□□ -0.54
TDP1-204ENST00000545686 PLEKHD1A6NEE1 506 aa11.69□□□□□ -0.54
TDP1-204ENST00000545686 TCERG1O14776 1098 aaKnown RBP11.69□□□□□ -0.54
TDP1-204ENST00000545686 BLMP54132 1417 aaPredicted RBP11.68□□□□□ -0.54
TDP1-204ENST00000545686 TSPY4P0CV99 314 aa11.68□□□□□ -0.54
TDP1-204ENST00000545686 TSPY10P0CW01 314 aa11.68□□□□□ -0.54
TDP1-204ENST00000545686 ZBTB47Q9UFB7 747 aaPredicted RBP11.68□□□□□ -0.54
TDP1-204ENST00000545686 RCAN3Q9UKA8 241 aa11.67□□□□□ -0.54
TDP1-204ENST00000545686 CCDC144AA2RUR9 1427 aa11.67□□□□□ -0.54
TDP1-204ENST00000545686 MS4A1P11836 297 aa11.66□□□□□ -0.54
TDP1-204ENST00000545686 CHMP7Q8WUX9 453 aaPredicted RBP11.66□□□□□ -0.54
TDP1-204ENST00000545686 DCAF11Q8TEB1 546 aa11.66□□□□□ -0.54
TDP1-204ENST00000545686 CNGB1Q14028 1251 aaPredicted RBP11.65□□□□□ -0.54
TDP1-204ENST00000545686 RSPH4AQ5TD94 716 aa11.65□□□□□ -0.54
TDP1-204ENST00000545686 JPH4Q96JJ6 628 aa11.65□□□□□ -0.54
TDP1-204ENST00000545686 RTL5Q5HYW3 569 aaPredicted RBP11.65□□□□□ -0.54
TDP1-204ENST00000545686 A2MP01023 1474 aa11.64□□□□□ -0.55
TDP1-204ENST00000545686 ATP10AO60312 1499 aa11.64□□□□□ -0.55
TDP1-204ENST00000545686 NBR1Q14596 966 aa11.63□□□□□ -0.55
TDP1-204ENST00000545686 MAGI2Q86UL8 1455 aa11.63□□□□□ -0.55
TDP1-204ENST00000545686 EXOC6Q8TAG9 804 aa11.63□□□□□ -0.55
TDP1-204ENST00000545686 KDM2AQ9Y2K7 1162 aa11.63□□□□□ -0.55
TDP1-204ENST00000545686 IQGAP1P46940 1657 aa11.62□□□□□ -0.55
TDP1-204ENST00000545686 PER1O15534 1290 aaPredicted RBP11.62□□□□□ -0.55
TDP1-204ENST00000545686 SYCP2Q9BX26 1530 aa11.62□□□□□ -0.55
TDP1-204ENST00000545686 PLA2R1Q13018 1463 aa11.61□□□□□ -0.55
TDP1-204ENST00000545686 ERBINQ96RT1 1412 aa11.61□□□□□ -0.55
TDP1-204ENST00000545686 CLASP1Q7Z460 1538 aa11.6□□□□□ -0.55
TDP1-204ENST00000545686 BACH2Q9BYV9 841 aa11.6□□□□□ -0.55
TDP1-204ENST00000545686 TTC37Q6PGP7 1564 aa11.6□□□□□ -0.55
TDP1-204ENST00000545686 PDE4AP27815 886 aa11.6□□□□□ -0.55
TDP1-204ENST00000545686 USP35Q9P2H5 1018 aa11.6□□□□□ -0.55
TDP1-204ENST00000545686 ERCC6Q03468 1493 aa11.6□□□□□ -0.55
TDP1-204ENST00000545686 DUOX2Q9NRD8 1548 aa11.59□□□□□ -0.55
TDP1-204ENST00000545686 SPHKAPQ2M3C7 1700 aa11.59□□□□□ -0.55
TDP1-204ENST00000545686 HNRNPMP52272 730 aaKnown RBP eCLIP11.59□□□□□ -0.55
TDP1-204ENST00000545686 SYNMO15061 1565 aa11.59□□□□□ -0.55
TDP1-204ENST00000545686 DISP3Q9P2K9 1392 aa11.58□□□□□ -0.56
TDP1-204ENST00000545686 CEP152O94986 1710 aa11.58□□□□□ -0.56
TDP1-204ENST00000545686 ARHGAP5Q13017 1502 aa11.58□□□□□ -0.56
TDP1-204ENST00000545686 MADDQ8WXG6 1647 aa11.58□□□□□ -0.56
TDP1-204ENST00000545686 TESK2Q96S53 571 aa11.58□□□□□ -0.56
TDP1-204ENST00000545686 VIRMAQ69YN4 1812 aaKnown RBP11.57□□□□□ -0.56
TDP1-204ENST00000545686 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.56□□□□□ -0.56
TDP1-204ENST00000545686 SENP3-EIF4A1A0A087X0R7 540 aa11.55□□□□□ -0.56
TDP1-204ENST00000545686 KIAA1210Q9ULL0 1709 aa11.55□□□□□ -0.56
TDP1-204ENST00000545686 SHROOM2Q13796 1616 aa11.55□□□□□ -0.56
TDP1-204ENST00000545686 TMF1P82094 1093 aa11.55□□□□□ -0.56
TDP1-204ENST00000545686 DDRGK1Q96HY6 314 aa11.55□□□□□ -0.56
TDP1-204ENST00000545686 PPM1GO15355 546 aaPredicted RBP11.54□□□□□ -0.56
TDP1-204ENST00000545686 NBPF1Q3BBV0 1214 aa11.54□□□□□ -0.56
TDP1-204ENST00000545686 MYOM1P52179 1685 aa11.54□□□□□ -0.56
TDP1-204ENST00000545686 WDR7Q9Y4E6 1490 aa11.54□□□□□ -0.56
TDP1-204ENST00000545686 FBLN2P98095 1184 aa11.53□□□□□ -0.56
TDP1-204ENST00000545686 CDCA7LQ96GN5 454 aa11.53□□□□□ -0.56
TDP1-204ENST00000545686 NPM2Q86SE8 214 aaKnown RBP11.52□□□□□ -0.56
TDP1-204ENST00000545686 PANK3Q9H999 370 aa11.52□□□□□ -0.56
TDP1-204ENST00000545686 CHD1O14646 1710 aa11.52□□□□□ -0.57
TDP1-204ENST00000545686 TRPM2O94759 1503 aa11.52□□□□□ -0.57
TDP1-204ENST00000545686 KDM5AP29375 1690 aaKnown RBP11.52□□□□□ -0.57
TDP1-204ENST00000545686 CC2D1BQ5T0F9 858 aaKnown RBP11.51□□□□□ -0.57
TDP1-204ENST00000545686 CRBNQ96SW2 442 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 SALL2Q9Y467 1007 aaPredicted RBP11.51□□□□□ -0.57
TDP1-204ENST00000545686 KDM2BQ8NHM5 1336 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 PIK3C2GO75747 1445 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 ASXL1Q8IXJ9 1541 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 ABCC2Q92887 1545 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 DEPDC5O75140 1603 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 NEURL4Q96JN8 1562 aa11.51□□□□□ -0.57
TDP1-204ENST00000545686 SCAPERQ9BY12 1400 aa11.5□□□□□ -0.57
TDP1-204ENST00000545686 RGL3Q3MIN7 710 aa11.5□□□□□ -0.57
TDP1-204ENST00000545686 NPC1L1Q9UHC9 1359 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms