RNA–Protein interactions for RNA: ENST00000541122.6

SMARCA4-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

APPRIS P4 TSL 5 BASIC

Gene SMARCA4, Length 5,139 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-207ENST00000541122 MRE11P49959 708 aa18.53■□□□□ 0.56
SMARCA4-207ENST00000541122 LMOD3Q0VAK6 560 aa18.52■□□□□ 0.56
SMARCA4-207ENST00000541122 RAPGEF2Q9Y4G8 1499 aa18.52■□□□□ 0.56
SMARCA4-207ENST00000541122 CCDC146Q8IYE0 955 aa18.51■□□□□ 0.55
SMARCA4-207ENST00000541122 TAOK2Q9UL54 1235 aa18.51■□□□□ 0.55
SMARCA4-207ENST00000541122 CCDC18Q5T9S5 1454 aa18.51■□□□□ 0.55
SMARCA4-207ENST00000541122 KIF3AQ9Y496 699 aa18.51■□□□□ 0.55
SMARCA4-207ENST00000541122 ZKSCAN2Q63HK3 967 aa18.5■□□□□ 0.55
SMARCA4-207ENST00000541122 CNTLNQ9NXG0 1405 aa18.5■□□□□ 0.55
SMARCA4-207ENST00000541122 PLIN1O60240 522 aa18.49■□□□□ 0.55
SMARCA4-207ENST00000541122 TRIM6-TRIM34B2RNG4 842 aa18.49■□□□□ 0.55
SMARCA4-207ENST00000541122 TPM2P07951 284 aa18.49■□□□□ 0.55
SMARCA4-207ENST00000541122 STK31Q9BXU1 1019 aa18.49■□□□□ 0.55
SMARCA4-207ENST00000541122 USP47Q96K76 1375 aa18.48■□□□□ 0.55
SMARCA4-207ENST00000541122 ZNF771Q7L3S4 317 aaPredicted RBP18.47■□□□□ 0.55
SMARCA4-207ENST00000541122 FAM13BQ9NYF5 915 aa18.47■□□□□ 0.55
SMARCA4-207ENST00000541122 SMARCA2P51531 1590 aa18.47■□□□□ 0.55
SMARCA4-207ENST00000541122 HDGFP51858 240 aaKnown RBP18.47■□□□□ 0.55
SMARCA4-207ENST00000541122 GPS2Q13227 327 aa18.46■□□□□ 0.55
SMARCA4-207ENST00000541122 SPAG9O60271 1321 aaKnown RBP18.46■□□□□ 0.55
SMARCA4-207ENST00000541122 CHMP4CQ96CF2 233 aa18.45■□□□□ 0.54
SMARCA4-207ENST00000541122 ST20-MTHFSA0A0A6YYL1 179 aa18.45■□□□□ 0.54
SMARCA4-207ENST00000541122 NUCB2P80303 420 aa18.45■□□□□ 0.54
SMARCA4-207ENST00000541122 CCDC7Q96M83 1385 aa18.45■□□□□ 0.54
SMARCA4-207ENST00000541122 A0A0G2JS52 829 aa18.45■□□□□ 0.54
SMARCA4-207ENST00000541122 RSPH4AQ5TD94 716 aa18.45■□□□□ 0.54
SMARCA4-207ENST00000541122 SETQ01105 290 aaPredicted RBP18.44■□□□□ 0.54
SMARCA4-207ENST00000541122 CARMIL2Q6F5E8 1435 aa18.44■□□□□ 0.54
SMARCA4-207ENST00000541122 PANK3Q9H999 370 aa18.44■□□□□ 0.54
SMARCA4-207ENST00000541122 TERF2IPQ9NYB0 399 aa18.44■□□□□ 0.54
SMARCA4-207ENST00000541122 DDX19BQ9UMR2 479 aa18.43■□□□□ 0.54
SMARCA4-207ENST00000541122 GOLGA6L19H0YKK7 550 aa18.43■□□□□ 0.54
SMARCA4-207ENST00000541122 REC8O95072 547 aa18.43■□□□□ 0.54
SMARCA4-207ENST00000541122 FHOD3Q2V2M9 1422 aa18.42■□□□□ 0.54
SMARCA4-207ENST00000541122 TPM3P06753 285 aa18.42■□□□□ 0.54
SMARCA4-207ENST00000541122 COG6Q9Y2V7 657 aa18.41■□□□□ 0.54
SMARCA4-207ENST00000541122 HSP90B1P14625 803 aaKnown RBP18.41■□□□□ 0.54
SMARCA4-207ENST00000541122 ISY1Q9ULR0 285 aaKnown RBP18.41■□□□□ 0.54
SMARCA4-207ENST00000541122 TEX35Q5T0J7 233 aa18.4■□□□□ 0.54
SMARCA4-207ENST00000541122 NOC3LQ8WTT2 800 aaKnown RBP18.4■□□□□ 0.54
SMARCA4-207ENST00000541122 ANKRD45Q5TZF3 282 aa18.4■□□□□ 0.54
SMARCA4-207ENST00000541122 WIZO95785 1651 aa18.4■□□□□ 0.54
SMARCA4-207ENST00000541122 PLEKHG5O94827 1062 aa18.4■□□□□ 0.54
SMARCA4-207ENST00000541122 NOL8Q76FK4 1167 aaKnown RBP18.39■□□□□ 0.53
SMARCA4-207ENST00000541122 CCDC39Q9UFE4 941 aa18.39■□□□□ 0.53
SMARCA4-207ENST00000541122 BECN2A8MW95 431 aa18.38■□□□□ 0.53
SMARCA4-207ENST00000541122 CCDC144AA2RUR9 1427 aa18.38■□□□□ 0.53
SMARCA4-207ENST00000541122 BRD4O60885 1362 aaPredicted RBP18.38■□□□□ 0.53
SMARCA4-207ENST00000541122 PKNOX2Q96KN3 472 aa18.37■□□□□ 0.53
SMARCA4-207ENST00000541122 DIAPH3Q9NSV4 1193 aa18.37■□□□□ 0.53
SMARCA4-207ENST00000541122 FOXD4L5Q5VV16 416 aaPredicted RBP18.37■□□□□ 0.53
SMARCA4-207ENST00000541122 FOXD4L4Q8WXT5 416 aaPredicted RBP18.37■□□□□ 0.53
SMARCA4-207ENST00000541122 C22orf23Q9BZE7 217 aa18.37■□□□□ 0.53
SMARCA4-207ENST00000541122 SAFB2Q14151 953 aaKnown RBP eCLIP18.36■□□□□ 0.532e-6■□□□□ 10.3
SMARCA4-207ENST00000541122 UACAQ9BZF9 1416 aa18.36■□□□□ 0.53
SMARCA4-207ENST00000541122 NASPP49321 788 aaPredicted RBP18.35■□□□□ 0.53
SMARCA4-207ENST00000541122 SF3A1Q15459 793 aaKnown RBP18.35■□□□□ 0.53
SMARCA4-207ENST00000541122 BRPF3Q9ULD4 1205 aa18.35■□□□□ 0.53
SMARCA4-207ENST00000541122 A0A0U1RQG5 324 aaPredicted RBP18.34■□□□□ 0.53
SMARCA4-207ENST00000541122 DZIP1LQ8IYY4 767 aaKnown RBP18.34■□□□□ 0.53
SMARCA4-207ENST00000541122 KIF7Q2M1P5 1343 aa18.34■□□□□ 0.53
SMARCA4-207ENST00000541122 ANO8Q9HCE9 1232 aaPredicted RBP18.34■□□□□ 0.53
SMARCA4-207ENST00000541122 TULP1O00294 542 aaPredicted RBP18.33■□□□□ 0.52
SMARCA4-207ENST00000541122 TRAK2O60296 914 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 CCDC173Q0VFZ6 552 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 EFCAB2Q5VUJ9 269 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 IL27Q8NEV9 243 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 H3BQV1 296 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 APAF1O14727 1248 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 IFFO2Q5TF58 517 aa18.32■□□□□ 0.52
SMARCA4-207ENST00000541122 ROCK1Q13464 1354 aa18.31■□□□□ 0.52
SMARCA4-207ENST00000541122 SLC4A10Q6U841 1118 aa18.31■□□□□ 0.52
SMARCA4-207ENST00000541122 STK26Q9P289 416 aa18.31■□□□□ 0.52
SMARCA4-207ENST00000541122 R3HCC1Q9Y3T6 440 aaKnown RBP18.31■□□□□ 0.52
SMARCA4-207ENST00000541122 MIA2Q96PC5 1412 aa18.31■□□□□ 0.52
SMARCA4-207ENST00000541122 RRP7AQ9Y3A4 280 aaKnown RBP18.3■□□□□ 0.52
SMARCA4-207ENST00000541122 BCL2L13Q9BXK5 485 aa18.3■□□□□ 0.52
SMARCA4-207ENST00000541122 ARGLU1Q9NWB6 273 aaPredicted RBP18.3■□□□□ 0.52
SMARCA4-207ENST00000541122 HMGN5P82970 282 aaKnown RBP18.3■□□□□ 0.52
SMARCA4-207ENST00000541122 INTS3Q68E01 1043 aaKnown RBP18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 CCDC70Q6NSX1 233 aa18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 LMOD2Q6P5Q4 547 aa18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 BACH2Q9BYV9 841 aa18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 RUSC2Q8N2Y8 1516 aa18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 RUFY2Q8WXA3 655 aa18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 API5Q9BZZ5 524 aaKnown RBP18.29■□□□□ 0.52
SMARCA4-207ENST00000541122 PAK3O75914 559 aaPredicted RBP18.28■□□□□ 0.52
SMARCA4-207ENST00000541122 TPM1P09493 284 aa18.28■□□□□ 0.52
SMARCA4-207ENST00000541122 FAM184AQ8NB25 1140 aa18.28■□□□□ 0.52
SMARCA4-207ENST00000541122 ZNF592Q92610 1267 aa18.28■□□□□ 0.52
SMARCA4-207ENST00000541122 RRP9O43818 475 aaKnown RBP18.28■□□□□ 0.52
SMARCA4-207ENST00000541122 SOX12O15370 315 aa18.27■□□□□ 0.52
SMARCA4-207ENST00000541122 RILPL2Q969X0 211 aa18.27■□□□□ 0.52
SMARCA4-207ENST00000541122 FRAT2O75474 233 aaPredicted RBP18.27■□□□□ 0.52
SMARCA4-207ENST00000541122 MCTP1Q6DN14 999 aa18.27■□□□□ 0.52
SMARCA4-207ENST00000541122 MBD3O95983 291 aa18.27■□□□□ 0.51
SMARCA4-207ENST00000541122 CUX1P39880 1505 aa18.27■□□□□ 0.51
SMARCA4-207ENST00000541122 CCDC66A2RUB6 948 aa18.27■□□□□ 0.51
SMARCA4-207ENST00000541122 NOM1Q5C9Z4 860 aaKnown RBP18.27■□□□□ 0.51
SMARCA4-207ENST00000541122 SMG6Q86US8 1419 aaKnown RBP18.26■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms