RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 FAM135AQ9P2D6 1515 aa22.95■■□□□ 1.26
USP28-208ENST00000540438 TRAPPC8Q9Y2L5 1435 aa22.94■■□□□ 1.26
USP28-208ENST00000540438 ZBED9Q6R2W3 1325 aa22.94■■□□□ 1.26
USP28-208ENST00000540438 PNISRQ8TF01 805 aaKnown RBP22.92■■□□□ 1.26
USP28-208ENST00000540438 KIF3BO15066 747 aa22.91■■□□□ 1.26
USP28-208ENST00000540438 CHGAP10645 457 aaKnown RBP22.91■■□□□ 1.26
USP28-208ENST00000540438 PLA2R1Q13018 1463 aa22.91■■□□□ 1.26
USP28-208ENST00000540438 SPAG9O60271 1321 aaKnown RBP22.91■■□□□ 1.26
USP28-208ENST00000540438 PANK3Q9H999 370 aa22.9■■□□□ 1.26
USP28-208ENST00000540438 KDM5CP41229 1560 aa22.87■■□□□ 1.25
USP28-208ENST00000540438 DISP3Q9P2K9 1392 aa22.87■■□□□ 1.25
USP28-208ENST00000540438 RSPH4AQ5TD94 716 aa22.86■■□□□ 1.25
USP28-208ENST00000540438 SHANK2Q9UPX8 1470 aa22.86■■□□□ 1.25
USP28-208ENST00000540438 NUTM2DQ5VT03 806 aaPredicted RBP22.86■■□□□ 1.25
USP28-208ENST00000540438 CDCA7LQ96GN5 454 aa22.84■■□□□ 1.25
USP28-208ENST00000540438 RALGAPBQ86X10 1494 aa22.84■■□□□ 1.25
USP28-208ENST00000540438 PPP4R2Q9NY27 417 aa22.82■■□□□ 1.24
USP28-208ENST00000540438 PREX2Q70Z35 1606 aa22.81■■□□□ 1.24
USP28-208ENST00000540438 A2MP01023 1474 aa22.81■■□□□ 1.24
USP28-208ENST00000540438 PRAG1Q86YV5 1406 aa22.8■■□□□ 1.24
USP28-208ENST00000540438 ABCC2Q92887 1545 aa22.8■■□□□ 1.24
USP28-208ENST00000540438 TESK2Q96S53 571 aa22.8■■□□□ 1.24
USP28-208ENST00000540438 UHRF1BP1Q6BDS2 1440 aa22.79■■□□□ 1.24
USP28-208ENST00000540438 SCAPERQ9BY12 1400 aa22.79■■□□□ 1.24
USP28-208ENST00000540438 GGT6Q6P531 493 aa22.78■■□□□ 1.24
USP28-208ENST00000540438 NUDCQ9Y266 331 aa22.78■■□□□ 1.24
USP28-208ENST00000540438 PLIN1O60240 522 aa22.77■■□□□ 1.24
USP28-208ENST00000540438 MYBBP1AQ9BQG0 1328 aaKnown RBP22.77■■□□□ 1.23
USP28-208ENST00000540438 ARHGEF5Q12774 1597 aa22.76■■□□□ 1.23
USP28-208ENST00000540438 MSH5O43196 834 aa22.76■■□□□ 1.23
USP28-208ENST00000540438 PLCH2O75038 1416 aa22.76■■□□□ 1.23
USP28-208ENST00000540438 PER1O15534 1290 aaPredicted RBP22.74■■□□□ 1.23
USP28-208ENST00000540438 CFAP70Q5T0N1 1121 aa22.74■■□□□ 1.23
USP28-208ENST00000540438 CCDC136Q96JN2 1154 aa22.74■■□□□ 1.23
USP28-208ENST00000540438 SKAP1Q86WV1 359 aa22.74■■□□□ 1.23
USP28-208ENST00000540438 KDM5DQ9BY66 1539 aa22.73■■□□□ 1.23
USP28-208ENST00000540438 TMF1P82094 1093 aa22.72■■□□□ 1.23
USP28-208ENST00000540438 KTN1Q86UP2 1357 aaKnown RBP22.71■■□□□ 1.23
USP28-208ENST00000540438 TNNT2P45379 298 aaPredicted RBP22.71■■□□□ 1.23
USP28-208ENST00000540438 ZCCHC11Q5TAX3 1644 aaKnown RBP22.7■■□□□ 1.22
USP28-208ENST00000540438 RALBP1Q15311 655 aa22.68■■□□□ 1.22
USP28-208ENST00000540438 NLRP13Q86W25 1043 aa22.68■■□□□ 1.22
USP28-208ENST00000540438 MYO5CQ9NQX4 1742 aa22.67■■□□□ 1.22
USP28-208ENST00000540438 CCDC146Q8IYE0 955 aa22.67■■□□□ 1.22
USP28-208ENST00000540438 EXOC6Q8TAG9 804 aa22.67■■□□□ 1.22
USP28-208ENST00000540438 ANP32EQ9BTT0 268 aa22.66■■□□□ 1.22
USP28-208ENST00000540438 ADGRF5Q8IZF2 1346 aa22.65■■□□□ 1.22
USP28-208ENST00000540438 SAFB2Q14151 953 aaKnown RBP eCLIP22.65■■□□□ 1.22
USP28-208ENST00000540438 ADAMTS8Q9UP79 889 aa22.65■■□□□ 1.22
USP28-208ENST00000540438 ERBINQ96RT1 1412 aa22.65■■□□□ 1.22
USP28-208ENST00000540438 ARID4BQ4LE39 1312 aaPredicted RBP22.64■■□□□ 1.22
USP28-208ENST00000540438 CFAP65Q6ZU64 1925 aaKnown RBP22.64■■□□□ 1.22
USP28-208ENST00000540438 RAPGEF3O95398 923 aa22.64■■□□□ 1.22
USP28-208ENST00000540438 TMEM132EQ6IEE7 984 aa22.64■■□□□ 1.22
USP28-208ENST00000540438 UGGT1Q9NYU2 1555 aa22.64■■□□□ 1.21
USP28-208ENST00000540438 KNSTRNQ9Y448 316 aa22.64■■□□□ 1.21
USP28-208ENST00000540438 SHROOM2Q13796 1616 aa22.63■■□□□ 1.21
USP28-208ENST00000540438 NPM1P06748 294 aaKnown RBP eCLIP22.62■■□□□ 1.21
USP28-208ENST00000540438 TRAK1Q9UPV9 953 aa22.61■■□□□ 1.21
USP28-208ENST00000540438 FANCAO15360 1455 aa22.61■■□□□ 1.21
USP28-208ENST00000540438 SMG6Q86US8 1419 aaKnown RBP22.6■■□□□ 1.21
USP28-208ENST00000540438 DUOX2Q9NRD8 1548 aa22.6■■□□□ 1.21
USP28-208ENST00000540438 POLR1AO95602 1720 aaPredicted RBP22.6■■□□□ 1.21
USP28-208ENST00000540438 RCAN3Q9UKA8 241 aa22.59■■□□□ 1.21
USP28-208ENST00000540438 BRD4O60885 1362 aaPredicted RBP22.58■■□□□ 1.21
USP28-208ENST00000540438 TRPM1Q7Z4N2 1603 aa22.57■■□□□ 1.2
USP28-208ENST00000540438 NPM2Q86SE8 214 aaKnown RBP22.55■■□□□ 1.2
USP28-208ENST00000540438 ABCC1P33527 1531 aa22.55■■□□□ 1.2
USP28-208ENST00000540438 ADGRL1O94910 1474 aa22.55■■□□□ 1.2
USP28-208ENST00000540438 PARD3Q8TEW0 1356 aa22.54■■□□□ 1.2
USP28-208ENST00000540438 ASXL2Q76L83 1435 aa22.54■■□□□ 1.2
USP28-208ENST00000540438 NEUROD2Q15784 382 aa22.53■■□□□ 1.2
USP28-208ENST00000540438 LRPPRCP42704 1394 aaKnown RBP22.53■■□□□ 1.2
USP28-208ENST00000540438 PPP2R1AP30153 589 aa22.52■■□□□ 1.2
USP28-208ENST00000540438 RRP1P56182 461 aaKnown RBP22.52■■□□□ 1.2
USP28-208ENST00000540438 ERICH6Q7L0X2 663 aa22.52■■□□□ 1.2
USP28-208ENST00000540438 ATP10AO60312 1499 aa22.52■■□□□ 1.2
USP28-208ENST00000540438 C20orf194Q5TEA3 1177 aa22.52■■□□□ 1.2
USP28-208ENST00000540438 UNC13BO14795 1591 aa22.52■■□□□ 1.2
USP28-208ENST00000540438 CLASP1Q7Z460 1538 aa22.52■■□□□ 1.2
USP28-208ENST00000540438 WDR43Q15061 677 aaKnown RBP eCLIP22.51■■□□□ 1.19
USP28-208ENST00000540438 COL17A1Q9UMD9 1497 aaPredicted RBP22.51■■□□□ 1.19
USP28-208ENST00000540438 WDR7Q9Y4E6 1490 aa22.51■■□□□ 1.19
USP28-208ENST00000540438 MAGI2Q86UL8 1455 aa22.51■■□□□ 1.19
USP28-208ENST00000540438 KANK1Q14678 1352 aa22.5■■□□□ 1.19
USP28-208ENST00000540438 OSCARQ8IYS5 282 aa22.5■■□□□ 1.19
USP28-208ENST00000540438 MAST1Q9Y2H9 1570 aa22.5■■□□□ 1.19
USP28-208ENST00000540438 GPRASP1Q5JY77 1395 aa22.5■■□□□ 1.19
USP28-208ENST00000540438 IQGAP3Q86VI3 1631 aa22.49■■□□□ 1.19
USP28-208ENST00000540438 STK26Q9P289 416 aa22.48■■□□□ 1.19
USP28-208ENST00000540438 CYB5RLQ6IPT4 315 aa22.47■■□□□ 1.19
USP28-208ENST00000540438 E9PCH4 1651 aa22.47■■□□□ 1.19
USP28-208ENST00000540438 AMER1Q5JTC6 1135 aaPredicted RBP22.47■■□□□ 1.19
USP28-208ENST00000540438 WASHC2CQ9Y4E1 1318 aa22.46■■□□□ 1.19
USP28-208ENST00000540438 SLC12A5Q9H2X9 1139 aa22.46■■□□□ 1.19
USP28-208ENST00000540438 PLXNC1O60486 1568 aa22.45■■□□□ 1.19
USP28-208ENST00000540438 CARD14Q9BXL6 1004 aa22.45■■□□□ 1.18
USP28-208ENST00000540438 ZFYVE16Q7Z3T8 1539 aa22.45■■□□□ 1.18
USP28-208ENST00000540438 RRP7AQ9Y3A4 280 aaKnown RBP22.44■■□□□ 1.18
USP28-208ENST00000540438 CRBNQ96SW2 442 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms