RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 CCDC144AA2RUR9 1427 aa21.76■■□□□ 1.07
CHMP1A-202ENST00000535997 TMC1Q8TDI8 760 aa21.75■■□□□ 1.07
CHMP1A-202ENST00000535997 ARHGAP5Q13017 1502 aa21.74■■□□□ 1.07
CHMP1A-202ENST00000535997 PLEKHH2Q8IVE3 1493 aa21.74■■□□□ 1.07
CHMP1A-202ENST00000535997 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.74■■□□□ 1.07
CHMP1A-202ENST00000535997 SYCP2Q9BX26 1530 aa21.74■■□□□ 1.07
CHMP1A-202ENST00000535997 CHD1O14646 1710 aa21.74■■□□□ 1.07
CHMP1A-202ENST00000535997 RALBP1Q15311 655 aa21.73■■□□□ 1.07
CHMP1A-202ENST00000535997 CNGB1Q14028 1251 aaPredicted RBP21.72■■□□□ 1.07
CHMP1A-202ENST00000535997 UNC13BO14795 1591 aa21.72■■□□□ 1.07
CHMP1A-202ENST00000535997 PRAG1Q86YV5 1406 aa21.72■■□□□ 1.07
CHMP1A-202ENST00000535997 NUDCQ9Y266 331 aa21.72■■□□□ 1.07
CHMP1A-202ENST00000535997 TTC37Q6PGP7 1564 aa21.71■■□□□ 1.07
CHMP1A-202ENST00000535997 ABCC2Q92887 1545 aa21.7■■□□□ 1.06
CHMP1A-202ENST00000535997 BRD4O60885 1362 aaPredicted RBP21.69■■□□□ 1.06
CHMP1A-202ENST00000535997 PLA2R1Q13018 1463 aa21.69■■□□□ 1.06
CHMP1A-202ENST00000535997 MYBBP1AQ9BQG0 1328 aaKnown RBP21.68■■□□□ 1.06
CHMP1A-202ENST00000535997 PLXNC1O60486 1568 aa21.68■■□□□ 1.06
CHMP1A-202ENST00000535997 RNF123Q5XPI4 1314 aa21.67■■□□□ 1.06
CHMP1A-202ENST00000535997 GPRASP1Q5JY77 1395 aa21.67■■□□□ 1.06
CHMP1A-202ENST00000535997 TRPM1Q7Z4N2 1603 aa21.67■■□□□ 1.06
CHMP1A-202ENST00000535997 MYO5CQ9NQX4 1742 aa21.67■■□□□ 1.06
CHMP1A-202ENST00000535997 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.67■■□□□ 1.062e-6■■□□□ 11.4
CHMP1A-202ENST00000535997 RGL3Q3MIN7 710 aa21.66■■□□□ 1.06
CHMP1A-202ENST00000535997 LRPPRCP42704 1394 aaKnown RBP21.66■■□□□ 1.06
CHMP1A-202ENST00000535997 FANCIQ9NVI1 1328 aa21.66■■□□□ 1.06
CHMP1A-202ENST00000535997 IQGAP3Q86VI3 1631 aa21.65■■□□□ 1.06
CHMP1A-202ENST00000535997 ATP10AO60312 1499 aa21.65■■□□□ 1.06
CHMP1A-202ENST00000535997 DUOX2Q9NRD8 1548 aa21.64■■□□□ 1.06
CHMP1A-202ENST00000535997 E9PCH4 1651 aa21.64■■□□□ 1.06
CHMP1A-202ENST00000535997 B4GALNT3Q6L9W6 998 aa21.64■■□□□ 1.05
CHMP1A-202ENST00000535997 PLCH2O75038 1416 aa21.63■■□□□ 1.05
CHMP1A-202ENST00000535997 NBPF1Q3BBV0 1214 aa21.63■■□□□ 1.05
CHMP1A-202ENST00000535997 ERBINQ96RT1 1412 aa21.62■■□□□ 1.05
CHMP1A-202ENST00000535997 EFCAB2Q5VUJ9 269 aa21.62■■□□□ 1.05
CHMP1A-202ENST00000535997 A2MP01023 1474 aa21.62■■□□□ 1.05
CHMP1A-202ENST00000535997 WASHC2CQ9Y4E1 1318 aa21.6■■□□□ 1.05
CHMP1A-202ENST00000535997 LAMC1P11047 1609 aa21.6■■□□□ 1.05
CHMP1A-202ENST00000535997 MAGI2Q86UL8 1455 aa21.6■■□□□ 1.05
CHMP1A-202ENST00000535997 ERCC6L2Q5T890 1561 aa21.6■■□□□ 1.05
CHMP1A-202ENST00000535997 PER1O15534 1290 aaPredicted RBP21.59■■□□□ 1.05
CHMP1A-202ENST00000535997 NLRP13Q86W25 1043 aa21.59■■□□□ 1.05
CHMP1A-202ENST00000535997 PARD3Q8TEW0 1356 aa21.58■■□□□ 1.04
CHMP1A-202ENST00000535997 TESK2Q96S53 571 aa21.57■■□□□ 1.04
CHMP1A-202ENST00000535997 PRDM15P57071 1507 aaPredicted RBP21.56■■□□□ 1.04
CHMP1A-202ENST00000535997 UHRF1BP1LA0JNW5 1464 aa21.56■■□□□ 1.04
CHMP1A-202ENST00000535997 EIF2AK4Q9P2K8 1649 aaKnown RBP21.56■■□□□ 1.04
CHMP1A-202ENST00000535997 COL17A1Q9UMD9 1497 aaPredicted RBP21.53■■□□□ 1.04
CHMP1A-202ENST00000535997 MSH5O43196 834 aa21.53■■□□□ 1.04
CHMP1A-202ENST00000535997 ZCCHC11Q5TAX3 1644 aaKnown RBP21.51■■□□□ 1.03
CHMP1A-202ENST00000535997 TMF1P82094 1093 aa21.5■■□□□ 1.03
CHMP1A-202ENST00000535997 ABCC1P33527 1531 aa21.49■■□□□ 1.03
CHMP1A-202ENST00000535997 PDE3BQ13370 1112 aa21.49■■□□□ 1.03
CHMP1A-202ENST00000535997 STAC3Q96MF2 364 aa21.49■■□□□ 1.03
CHMP1A-202ENST00000535997 DISP3Q9P2K9 1392 aa21.48■■□□□ 1.03
CHMP1A-202ENST00000535997 RTEL1-TNFRSF6BF6WH68 1400 aa21.48■■□□□ 1.03
CHMP1A-202ENST00000535997 TRAPPC8Q9Y2L5 1435 aa21.48■■□□□ 1.03
CHMP1A-202ENST00000535997 CCDC136Q96JN2 1154 aa21.48■■□□□ 1.03
CHMP1A-202ENST00000535997 INSRP06213 1382 aa21.47■■□□□ 1.03
CHMP1A-202ENST00000535997 CLASP1Q7Z460 1538 aa21.46■■□□□ 1.03
CHMP1A-202ENST00000535997 PANK3Q9H999 370 aa21.46■■□□□ 1.03
CHMP1A-202ENST00000535997 SPAG9O60271 1321 aaKnown RBP21.46■■□□□ 1.03
CHMP1A-202ENST00000535997 SENP3-EIF4A1A0A087X0R7 540 aa21.45■■□□□ 1.02
CHMP1A-202ENST00000535997 ARAP3Q8WWN8 1544 aa21.45■■□□□ 1.02
CHMP1A-202ENST00000535997 ZMYM4Q5VZL5 1548 aa21.43■■□□□ 1.02
CHMP1A-202ENST00000535997 CC2D1BQ5T0F9 858 aaKnown RBP21.41■■□□□ 1.02
CHMP1A-202ENST00000535997 AFAP1Q8N556 730 aa21.41■■□□□ 1.02
CHMP1A-202ENST00000535997 RNF17Q9BXT8 1623 aaKnown RBP21.41■■□□□ 1.02
CHMP1A-202ENST00000535997 RCAN3Q9UKA8 241 aa21.4■■□□□ 1.02
CHMP1A-202ENST00000535997 RRP1P56182 461 aaKnown RBP21.39■■□□□ 1.02
CHMP1A-202ENST00000535997 PTPRTO14522 1441 aa21.39■■□□□ 1.02
CHMP1A-202ENST00000535997 TRPM2O94759 1503 aa21.38■■□□□ 1.01
CHMP1A-202ENST00000535997 CDCA8Q53HL2 280 aa21.36■■□□□ 1.01
CHMP1A-202ENST00000535997 ZFYVE16Q7Z3T8 1539 aa21.36■■□□□ 1.01
CHMP1A-202ENST00000535997 MADDQ8WXG6 1647 aa21.35■■□□□ 1.01
CHMP1A-202ENST00000535997 ERICH6Q7L0X2 663 aa21.35■■□□□ 1.01
CHMP1A-202ENST00000535997 SALL2Q9Y467 1007 aaPredicted RBP21.35■■□□□ 1.01
CHMP1A-202ENST00000535997 SCAPERQ9BY12 1400 aa21.35■■□□□ 1.01
CHMP1A-202ENST00000535997 BLMP54132 1417 aaPredicted RBP21.34■■□□□ 1.01
CHMP1A-202ENST00000535997 DEPDC5O75140 1603 aa21.34■■□□□ 1.01
CHMP1A-202ENST00000535997 KANK1Q14678 1352 aa21.33■■□□□ 1
CHMP1A-202ENST00000535997 WDR7Q9Y4E6 1490 aa21.33■■□□□ 1
CHMP1A-202ENST00000535997 CEP152O94986 1710 aa21.32■■□□□ 1
CHMP1A-202ENST00000535997 KNSTRNQ9Y448 316 aa21.32■■□□□ 1
CHMP1A-202ENST00000535997 IQGAP1P46940 1657 aa21.32■■□□□ 1
CHMP1A-202ENST00000535997 SPHKAPQ2M3C7 1700 aa21.32■■□□□ 1
CHMP1A-202ENST00000535997 SCAF11Q99590 1463 aaKnown RBP21.32■■□□□ 1
CHMP1A-202ENST00000535997 TET3O43151 1660 aa21.3■■□□□ 1
CHMP1A-202ENST00000535997 CDCA7LQ96GN5 454 aa21.29■■□□□ 1
CHMP1A-202ENST00000535997 FANCAO15360 1455 aa21.29■■□□□ 1
CHMP1A-202ENST00000535997 SLC24A1O60721 1099 aa21.29■■□□□ 1
CHMP1A-202ENST00000535997 EXOC6Q8TAG9 804 aa21.28■■□□□ 1
CHMP1A-202ENST00000535997 VWDEQ8N2E2 1590 aa21.28■■□□□ 1
CHMP1A-202ENST00000535997 ATP7AQ04656 1500 aa21.28■■□□□ 1
CHMP1A-202ENST00000535997 CLTCL1P53675 1640 aa21.27■■□□□ 1
CHMP1A-202ENST00000535997 NEURL4Q96JN8 1562 aa21.27■■□□□ 1
CHMP1A-202ENST00000535997 AMER1Q5JTC6 1135 aaPredicted RBP21.27■■□□□ 1
CHMP1A-202ENST00000535997 ABCA9Q8IUA7 1624 aa21.26■□□□□ 0.99
CHMP1A-202ENST00000535997 KIF3BO15066 747 aa21.26■□□□□ 0.99
CHMP1A-202ENST00000535997 INO80Q9ULG1 1556 aaPredicted RBP21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 6.5 ms